Non-Coding RNA Search

Ss1.1-rlyg02_c4.5

Sequence:


               
               TTTTTTTTTTTTTCGTTGTTGTTTTGTTGCAAACAAACTGGAAACTTGTTTCTCTTTTTT
TGTACAAATGAGAGTTTGCAGATGTAGTGTATCACTGAGTCATTTGCAGTGTTTTCTGCC
ACAGATTTTGGGGCTGCCTAAACTCTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGGTGACACAAAACAAAGCAAGCATGTGTCATGAGGTTCCCCTGCATGTTC
TCTTGGAGAGAGGGAGGAGGGGAAGGGAGTCAGCCCACTGACAGACCTTAATTCTTCATT
ACTTCTGTGGCTGGAGAGTTTGAGGATTGCTTTTTAAAAAAGACAGCAAACTTTTTTTTT
TTATTTAAAAAAAAAAGATATATTAACAGTTTTAGAAGTCAGTAGCATAAAATCTTAAAG
AGCACTCTTATAATACGGCATCTTTCAATTTCTGTATAAAAGCAGATCTTTTTTAAAAAA
AATATTTCTGTAACTTAAGAATCCTGGCATTTAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTCGTTGTTGTTTTGTTGCAAACAAACTGGAAACTTGTTTCTCTTTTTT
TGTACAAATGAGAGTTTGCAGATGTAGTGTATCACTGAGTCATTTGCAGTGTTTTCTGCC
ACAGATTTTGGGGCTGCCTAAACTCTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGGTGACACAAAACAAAGCAAGCATGTGTCATGAGGTTCCCCTGCATGTTC
TCTTGGAGAGAGGGAGGAGGGGAAGGGAGTCAGCCCACTGACAGACCTTAATTCTTCATT
ACTTCTGTGGCTGGAGAGTTTGAGGATTGCTTTTTAAAAAAGACAGCAAACTTTTTTTTT
TTATTTAAAAAAAAAAGATATATTAACAGTTTTAGAAGTCAGTAGCATAAAATCTTAAAG
AGCACTCTTATAATACGGCATCTTTCAATTTCTGTATAAAAGCAGATCTTTTTTAAAAAA
AATATTTCTGTAACTTAAGAATCCTGGCATTTAAAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               51-152, - strand, RNAz p=0.693853

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               51-152, - strand, RNAz p=0.693853

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               1-152, gnl|bosTau2|chr19 (53873537-53873390)
               

               
               1-152, gnl|canFam2|chr9 (11353100-11353243)
               

               
               1-152, gnl|echTel1|scaffold_285466 (47761-47932)
               

               
               1-152, gnl|galGal2|chr18 (8576332-8576516)
               

               
               1-152, gnl|hg17|chr17 (67633448-67633583)
               

               
               1-152, gnl|Hg17|chr17 (67633494-67633660)
               

               
               1-152, gnl|mm7|chr11 (112896063-112896231)
               

               
               1-152, gnl|Mm7|chr11 (112896125-112896302)
               

               
               1-152, gnl|monDom2|scaffold_18 (27930055-27930162)
               

               
               1-152, gnl|oryCun1|scaffold_82313 (8263-8122)
               

               
               1-152, gnl|panTro1|chr19 (70973114-70973249)
               

               
               1-152, gnl|rheMac2|chr16 (67362077-67362205)
               

               
               1-152, gnl|rn3|chr10 (102405073-102405244)
               


               
               182-515, gnl|bosTau2|chr19 (53873398-53873067)
               

               
               182-515, gnl|Hg17|chr17 (67633648-67633976)
               

               
               182-515, gnl|Mm7|chr11 (112896280-112896642)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-152, gnl|bosTau2|chr19 (53873537-53873390)
               

               
               1-152, gnl|canFam2|chr9 (11353100-11353243)
               

               
               1-152, gnl|echTel1|scaffold_285466 (47761-47932)
               

               
               1-152, gnl|galGal2|chr18 (8576332-8576516)
               

               
               1-152, gnl|hg17|chr17 (67633448-67633583)
               

               
               1-152, gnl|Hg17|chr17 (67633494-67633660)
               

               
               1-152, gnl|mm7|chr11 (112896063-112896231)
               

               
               1-152, gnl|Mm7|chr11 (112896125-112896302)
               

               
               1-152, gnl|monDom2|scaffold_18 (27930055-27930162)
               

               
               1-152, gnl|oryCun1|scaffold_82313 (8263-8122)
               

               
               1-152, gnl|panTro1|chr19 (70973114-70973249)
               

               
               1-152, gnl|rheMac2|chr16 (67362077-67362205)
               

               
               1-152, gnl|rn3|chr10 (102405073-102405244)
               


               
               182-515, gnl|bosTau2|chr19 (53873398-53873067)
               

               
               182-515, gnl|Hg17|chr17 (67633648-67633976)
               

               
               182-515, gnl|Mm7|chr11 (112896280-112896642)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               fce (0.271592)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               tra (0.123092)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               tra (0.123092)

	1-152, gnl\|bosTau2\|chr19 (53873537-53873390)
	1-152, gnl\|canFam2\|chr9 (11353100-11353243)
	1-152, gnl\|echTel1\|scaffold_285466 (47761-47932)
	1-152, gnl\|galGal2\|chr18 (8576332-8576516)
	1-152, gnl\|hg17\|chr17 (67633448-67633583)
	1-152, gnl\|Hg17\|chr17 (67633494-67633660)
	1-152, gnl\|mm7\|chr11 (112896063-112896231)
	1-152, gnl\|Mm7\|chr11 (112896125-112896302)
	1-152, gnl\|monDom2\|scaffold_18 (27930055-27930162)
	1-152, gnl\|oryCun1\|scaffold_82313 (8263-8122)
	1-152, gnl\|panTro1\|chr19 (70973114-70973249)
	1-152, gnl\|rheMac2\|chr16 (67362077-67362205)
	1-152, gnl\|rn3\|chr10 (102405073-102405244)

	182-515, gnl\|bosTau2\|chr19 (53873398-53873067)
	182-515, gnl\|Hg17\|chr17 (67633648-67633976)
	182-515, gnl\|Mm7\|chr11 (112896280-112896642)

	fce (0.271592)
	sag (0.182715)
	fbs (0.175346)
	fhi (0.169578)
	lyg (0.133103)
	ese (0.126502)
	tra (0.123092)