Ss1.1-rlyg03_i20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGAGCGGTGGCAGCAGGAGGTGGCAGAGACGGTCTTCGACACCATCAACGCCGAGACGG ACCGGCTGGAGGCCCGCAAGAAAACCAAAAACAAGCAGCTGGGCCACGAGGAAGACTACG CCCTGGGCAAGGACTGCATCATGCACGGCTATATGTCCAAGATGGGCAACCCCTTCCTGA CCCAGTGGCAGCGGCGGTACTTCTACCTGTTCCCCAACCGGCTCGAGTGGCGGGGCGAGG GCGAGGCCCCGCAGAGCCTGCTGACCATGGAGGAGATCCAGTCGGTGGAGGAGACGCAGA TCAAGGAGCGGAAGTGCCTCCTTCTCAAGATCCGAGGTGGCAAGCAGTTCGTCCTGCAGT GCGACAGTGACCCCGAGCTGGTGCAGTGGAAGAAGGAGCTGCGCGACGCCTACCGCGAGG CCCAGCAGCTGGTGCAGCGGGTGCCCAAGATGAAGAACAAGCCGCGCTCGCCCGTCGTGG AGCTGAGCAAGGTGCCGCTGGTGCAGCGTGGCAGCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGAGCGGTGGCAGCAGGAGGTGGCAGAGACGGTCTTCGACACCATCAACGCCGAGACGG ACCGGCTGGAGGCCCGCAAGAAAACCAAAAACAAGCAGCTGGGCCACGAGGAAGACTACG CCCTGGGCAAGGACTGCATCATGCACGGCTATATGTCCAAGATGGGCAACCCCTTCCTGA CCCAGTGGCAGCGGCGGTACTTCTACCTGTTCCCCAACCGGCTCGAGTGGCGGGGCGAGG GCGAGGCCCCGCAGAGCCTGCTGACCATGGAGGAGATCCAGTCGGTGGAGGAGACGCAGA TCAAGGAGCGGAAGTGCCTCCTTCTCAAGATCCGAGGTGGCAAGCAGTTCGTCCTGCAGT GCGACAGTGACCCCGAGCTGGTGCAGTGGAAGAAGGAGCTGCGCGACGCCTACCGCGAGG CCCAGCAGCTGGTGCAGCGGGTGCCCAAGATGAAGAACAAGCCGCGCTCGCCCGTCGTGG AGCTGAGCAAGGTGCCGCTGGTGCAGCGTGGCAGCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 396-514, - strand, RNAz p=0.664859 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 396-514, - strand, RNAz p=0.664859 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 113-251, gnl|bosTau2|chr29 (36333044-36332906) | |
| 113-251, gnl|canFam2|chr18 (53176418-53176272) | |
| 113-251, gnl|danRer3|chr19 (34875750-34875606) | |
| 113-251, gnl|dasNov1|scaffold_151521 (9255-9400) | |
| 113-251, gnl|echTel1|scaffold_285172 (6724-6870) | |
| 113-251, gnl|fr1|chrUn (227254276-227254419) | |
| 113-251, gnl|galGal2|chr15 (7005110-7005253) | |
| 113-251, gnl|hg17|chr11 (66808890-66809036) | |
| 113-251, gnl|Hg17|chr11 (66808892-66809030) | |
| 113-251, gnl|loxAfr1|scaffold_3648 (22775-22629) | |
| 113-251, gnl|mm7|chr19 (4182505-4182360) | |
| 113-251, gnl|Mm7|chr19 (4182502-4182364) | |
| 113-251, gnl|monDom2|scaffold_151 (523165-523311) | |
| 113-251, gnl|panTro1|chr9 (68066689-68066835) | |
| 113-251, gnl|rheMac2|chr14 (7178397-7178251) | |
| 113-251, gnl|rn3|chr1 (207027508-207027363) | |
| 113-251, gnl|tetNig1|chrUn_random (413403-413260) | |
| 113-251, gnl|xenTro1|scaffold_9 (1284485-1284631) | |
| 366-514, gnl|bosTau2|chr29 (36332558-36332410) | |
| 366-514, gnl|canFam2|chr18 (53175946-53175767) | |
| 366-514, gnl|danRer3|chr19 (34866913-34866748) | |
| 366-514, gnl|dasNov1|scaffold_151521 (9670-9846) | |
| 366-514, gnl|echTel1|scaffold_55325 (5574-5433) | |
| 366-514, gnl|fr1|chrUn (227255414-227255588) | |
| 366-514, gnl|galGal2|chr15 (7006742-7006904) | |
| 366-514, gnl|hg17|chr11 (66809321-66809499) | |
| 366-514, gnl|Hg17|chr11 (66809333-66809481) | |
| 366-514, gnl|loxAfr1|scaffold_3648 (17589-17424) | |
| 366-514, gnl|mm7|chr19 (4182084-4181887) | |
| 366-514, gnl|Mm7|chr19 (4182070-4181922) | |
| 366-514, gnl|panTro1|chr9 (68067120-68067298) | |
| 366-514, gnl|rheMac2|chr14 (7177966-7177788) | |
| 366-514, gnl|rn3|chr1 (207027098-207026901) | |
| 366-514, gnl|tetNig1|chrUn_random (412268-412094) | |
| 366-514, gnl|xenTro1|scaffold_9 (1289508-1289680) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 113-251, gnl|bosTau2|chr29 (36333044-36332906) | |
| 113-251, gnl|canFam2|chr18 (53176418-53176272) | |
| 113-251, gnl|danRer3|chr19 (34875750-34875606) | |
| 113-251, gnl|dasNov1|scaffold_151521 (9255-9400) | |
| 113-251, gnl|echTel1|scaffold_285172 (6724-6870) | |
| 113-251, gnl|fr1|chrUn (227254276-227254419) | |
| 113-251, gnl|galGal2|chr15 (7005110-7005253) | |
| 113-251, gnl|hg17|chr11 (66808890-66809036) | |
| 113-251, gnl|Hg17|chr11 (66808892-66809030) | |
| 113-251, gnl|loxAfr1|scaffold_3648 (22775-22629) | |
| 113-251, gnl|mm7|chr19 (4182505-4182360) | |
| 113-251, gnl|Mm7|chr19 (4182502-4182364) | |
| 113-251, gnl|monDom2|scaffold_151 (523165-523311) | |
| 113-251, gnl|panTro1|chr9 (68066689-68066835) | |
| 113-251, gnl|rheMac2|chr14 (7178397-7178251) | |
| 113-251, gnl|rn3|chr1 (207027508-207027363) | |
| 113-251, gnl|tetNig1|chrUn_random (413403-413260) | |
| 113-251, gnl|xenTro1|scaffold_9 (1284485-1284631) | |
| 366-514, gnl|bosTau2|chr29 (36332558-36332410) | |
| 366-514, gnl|canFam2|chr18 (53175946-53175767) | |
| 366-514, gnl|danRer3|chr19 (34866913-34866748) | |
| 366-514, gnl|dasNov1|scaffold_151521 (9670-9846) | |
| 366-514, gnl|echTel1|scaffold_55325 (5574-5433) | |
| 366-514, gnl|fr1|chrUn (227255414-227255588) | |
| 366-514, gnl|galGal2|chr15 (7006742-7006904) | |
| 366-514, gnl|hg17|chr11 (66809321-66809499) | |
| 366-514, gnl|Hg17|chr11 (66809333-66809481) | |
| 366-514, gnl|loxAfr1|scaffold_3648 (17589-17424) | |
| 366-514, gnl|mm7|chr19 (4182084-4181887) | |
| 366-514, gnl|Mm7|chr19 (4182070-4181922) | |
| 366-514, gnl|panTro1|chr9 (68067120-68067298) | |
| 366-514, gnl|rheMac2|chr14 (7177966-7177788) | |
| 366-514, gnl|rn3|chr1 (207027098-207026901) | |
| 366-514, gnl|tetNig1|chrUn_random (412268-412094) | |
| 366-514, gnl|xenTro1|scaffold_9 (1289508-1289680) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.161186) | |
| lyg (0.133103) | |
| cov (0.132153) |