Non-Coding RNA Search

Ss1.1-rlyg05_e8.5

Sequence:


               
               TAGCAAATAAACTAAACAAGTGAACCATTTCAGCCAAGTTTTTTTTAATTGTAAAGTGTG
TCTTAGAAATAATCTTTGAGCATCCTGAAGCAGATTTTTTATCTCATTTTTGTGAAATAA
CAAGGACAAAGGACCTTCAGAATAGCTTCTCCCACCAAATGATAAGCCATCTTGTTTCTT
CAGCATGGAAACAACAGTGAAAAGTCAGAACTGGATTAATTTTTCTTTAGGTAGGTATAC
GCAGTTTACATAAGCAGTGCCTTTAATTTTTGTTTTTTTGGCCACACCGGCAACAAGTGG
AAATTCCTCGGCCAGGGATCAAACCCATGCTGCAACTGCAACTTGTGCTACAACTGTGGC
AACACCAGATCCTTAAGCCACTGTACCACATGGGAACTTCCTGGATTATTTAATTTTTAT
ATTTAATGTTGTCATTCAGCATGAGTTTTATTCATGAGTTTTAGGTTACCAATTGAAGCT
CTGGAGTGGAGAATATTCTTAACTGAATATTCACATTTCAGCATATTTTCCTCATTAGGG
TTGGAAAGGAACCCCTATATATGTTTATATGTGTTTCCTTTTGTCTTCAACCATCAATAA
AATGTTTTCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGCAAATAAACTAAACAAGTGAACCATTTCAGCCAAGTTTTTTTTAATTGTAAAGTGTG
TCTTAGAAATAATCTTTGAGCATCCTGAAGCAGATTTTTTATCTCATTTTTGTGAAATAA
CAAGGACAAAGGACCTTCAGAATAGCTTCTCCCACCAAATGATAAGCCATCTTGTTTCTT
CAGCATGGAAACAACAGTGAAAAGTCAGAACTGGATTAATTTTTCTTTAGGTAGGTATAC
GCAGTTTACATAAGCAGTGCCTTTAATTTTTGTTTTTTTGGCCACACCGGCAACAAGTGG
AAATTCCTCGGCCAGGGATCAAACCCATGCTGCAACTGCAACTTGTGCTACAACTGTGGC
AACACCAGATCCTTAAGCCACTGTACCACATGGGAACTTCCTGGATTATTTAATTTTTAT
ATTTAATGTTGTCATTCAGCATGAGTTTTATTCATGAGTTTTAGGTTACCAATTGAAGCT
CTGGAGTGGAGAATATTCTTAACTGAATATTCACATTTCAGCATATTTTCCTCATTAGGG
TTGGAAAGGAACCCCTATATATGTTTATATGTGTTTCCTTTTGTCTTCAACCATCAATAA
AATGTTTTCAGT

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               1-256, gnl|bosTau2|chr10 (12623885-12623624)
               

               
               1-256, gnl|Hg17|chr15 (68735276-68735031)
               


               
               404-608, gnl|bosTau2|chr10 (12623616-12623412)
               

               
               404-608, gnl|Hg17|chr15 (68735024-68734510)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-256, gnl|bosTau2|chr10 (12623885-12623624)
               

               
               1-256, gnl|Hg17|chr15 (68735276-68735031)
               


               
               404-608, gnl|bosTau2|chr10 (12623616-12623412)
               

               
               404-608, gnl|Hg17|chr15 (68735024-68734510)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               isp (0.150376)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)

	1-256, gnl\|bosTau2\|chr10 (12623885-12623624)
	1-256, gnl\|Hg17\|chr15 (68735276-68735031)

	404-608, gnl\|bosTau2\|chr10 (12623616-12623412)
	404-608, gnl\|Hg17\|chr15 (68735024-68734510)

	isp (0.150376)
	fat (0.147427)
	csk (0.140746)
	pla (0.133672)
	lyg (0.133103)