Non-Coding RNA Search

Ss1.1-rlyg07_d23.5

Sequence:


               
               AGCATAGACAGACAAAATCACATATATGAAATGTTCCTGAAAGAATAAAATATAAAGTAT
CGGTTTTCCTGAGGGTTCTTTGTATTCCTTAGGCATTGTAATTTATACTCCTCCCCACCC
CGAATAAGCATATTCTTTCAAGAAAAGGCAATGAAAAAAGAAATGAGTTTTCTTCTCAGA
CCGTAAAAAGTTTTTAGTGTATAAAGTGGTTTTTACATATGATAGACTGGGCTTTATGCA
CACAGGTGGACTGGGTGGTTATGGATCAGGAGACAGTGAAGATGAGAGGAGTGACCGAGG
CTCTGAGTCATCTGATACTGATGATGAGGAATTACGGCACCGAATCCGGCAAAAACAGGA
AGCTTTTTGGAGAAAAGAAAAAGAGCAGCAGCTGTTACATGATAAACAGATGGAAGAAGA
GAAGCAACAAACAGAAAGGGTTACAAAAGAGATGAATGAATTTATCCATAAAGAGCAAAA
TAGTTTATCAGTACTAGAAGCAAGGGAAGCAGATGGTGATGTGGTTAATGAAAAGAAGAG
AACTCCAAATGAAACTATGTCAGTTTTAGAACCAAAAAAAGAGCATAAAGAAAAAGAGAA
ACAAGGAAGGAGTAGATCAGGAAGTTCTAGTAGTGGTAGTTCCAGTAGCAATAGCAGAAC
TAGCAGTACTAGTAGTACTGTCTCTAGCTCTTCATACAGTTCTAGCTCAGGTAGTAGTCG
CACTTCTTCTCGATCTTCTTCTCCCAAAAGGAAAAAGAGACATAGTAGAAGTAGATCTCC
AACAGTTAAAGCTAGACGTAGTAGGAGTCGAAGTTACTCACGAAGAATTAAAATAGAGAG
CAGTAGGGCTAGAGTAAAGATTAGAGATAGGAGGAGATCTAATAGAAATAGCATTGAAAG
AGAAAGAAGAAGAAATCGAAGTCCGTCCCGAGAGAGACGTAGAAGTAGAAGTCGCTCAAG
GGATAGGCGAACCAATCGGTCCAGTCGCAGTAGGAGTCGAGATAGGCGTAAAATTGATGA
TCAACGTGGAAATCTTAGTGGGAGCAGTCATAAGCATAAAGGTGAGGCTAAAGAACAAGA
GAGGAAAAAGGAGAGGAGTCGAAGTATAGATAAAGATAGAAAAAAGAAAGACAAAGAAAG
GGAGCGTGAACAGGATAAAAGGAAGGAGAAACAAAAAAGGGAAGAAAAAGATTTTAAGTT
CAGTAGTCAGGATGATAGGTTAAAAAGGAAACGAGAAAGTGAAAGAACATTCTCTAGGAG
TGGTTCTATATCTGTTAAAATCATAAGACATGATTCTAGACAGGATAGTAAGAAAAGTAC
TACCAAAGATAGTAAAAAACATTCAGGCTCTGATTCTAGTGGAAGGAGCAGTTCTGAATC
TCCAGGAAGTAGCAAAGAAAAGAAGGCTAAGAAGCCTAAACATAGTCGATCGAGATCCAT
GGAGAAATCTCAAAGGTCTGGTAAGAAGGCAAGCCGCAAACACAAGTCTAAGTCCCGATC
AAGGTAGTATACTTTTTAAAGTATTTTGTCTGATTTTTAAAAAAAAAAATTTGACTGAAT
TTATTCAAAGTTGAAAGTGTCCTTTCTCTCTCTCTCTTTAATAAACTCAATTTGGTACTG
ATAAATTATCATAGTCTTAAGTAATTTTAGAAATCCTATATAATATTATTTATTTGAAAA
TTGCAGATTCTTTAGTGTAAAATACATTTTTATTTTTAAATTTTATCTTTTCCCTTTCTT
TTTTTCAGATCAACAACCCCTCCCCGTCGTAAACGCTGAGGAATGATGTGGCAAGAATGC
CATGATGTTTAAAAAATTCCATGAGTTTTAAGGGCTTGTCTCATTATAGAGGCACATTGT
GGCTGTGTAGGTGAAACCAGAATCTTTTTTTTTTTTTTTTTTTTAAATCTGTAAATAGGT
GTACTTTTTCCAAATGCTGCTCCAAGTTACTTAATAGGATTTCTTTGTATTACATTTTTT
TCAAAAAAAAAAAAAATAGTGCATAATAAGACTATAAACATGCCATTCTCTTTCAGCTGT
AATGTTCTTAAAATTATTCTTGAATGTACTGTGATGTCAATAAAGCTCTTTAGTTCATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCATAGACAGACAAAATCACATATATGAAATGTTCCTGAAAGAATAAAATATAAAGTAT
CGGTTTTCCTGAGGGTTCTTTGTATTCCTTAGGCATTGTAATTTATACTCCTCCCCACCC
CGAATAAGCATATTCTTTCAAGAAAAGGCAATGAAAAAAGAAATGAGTTTTCTTCTCAGA
CCGTAAAAAGTTTTTAGTGTATAAAGTGGTTTTTACATATGATAGACTGGGCTTTATGCA
CACAGGTGGACTGGGTGGTTATGGATCAGGAGACAGTGAAGATGAGAGGAGTGACCGAGG
CTCTGAGTCATCTGATACTGATGATGAGGAATTACGGCACCGAATCCGGCAAAAACAGGA
AGCTTTTTGGAGAAAAGAAAAAGAGCAGCAGCTGTTACATGATAAACAGATGGAAGAAGA
GAAGCAACAAACAGAAAGGGTTACAAAAGAGATGAATGAATTTATCCATAAAGAGCAAAA
TAGTTTATCAGTACTAGAAGCAAGGGAAGCAGATGGTGATGTGGTTAATGAAAAGAAGAG
AACTCCAAATGAAACTATGTCAGTTTTAGAACCAAAAAAAGAGCATAAAGAAAAAGAGAA
ACAAGGAAGGAGTAGATCAGGAAGTTCTAGTAGTGGTAGTTCCAGTAGCAATAGCAGAAC
TAGCAGTACTAGTAGTACTGTCTCTAGCTCTTCATACAGTTCTAGCTCAGGTAGTAGTCG
CACTTCTTCTCGATCTTCTTCTCCCAAAAGGAAAAAGAGACATAGTAGAAGTAGATCTCC
AACAGTTAAAGCTAGACGTAGTAGGAGTCGAAGTTACTCACGAAGAATTAAAATAGAGAG
CAGTAGGGCTAGAGTAAAGATTAGAGATAGGAGGAGATCTAATAGAAATAGCATTGAAAG
AGAAAGAAGAAGAAATCGAAGTCCGTCCCGAGAGAGACGTAGAAGTAGAAGTCGCTCAAG
GGATAGGCGAACCAATCGGTCCAGTCGCAGTAGGAGTCGAGATAGGCGTAAAATTGATGA
TCAACGTGGAAATCTTAGTGGGAGCAGTCATAAGCATAAAGGTGAGGCTAAAGAACAAGA
GAGGAAAAAGGAGAGGAGTCGAAGTATAGATAAAGATAGAAAAAAGAAAGACAAAGAAAG
GGAGCGTGAACAGGATAAAAGGAAGGAGAAACAAAAAAGGGAAGAAAAAGATTTTAAGTT
CAGTAGTCAGGATGATAGGTTAAAAAGGAAACGAGAAAGTGAAAGAACATTCTCTAGGAG
TGGTTCTATATCTGTTAAAATCATAAGACATGATTCTAGACAGGATAGTAAGAAAAGTAC
TACCAAAGATAGTAAAAAACATTCAGGCTCTGATTCTAGTGGAAGGAGCAGTTCTGAATC
TCCAGGAAGTAGCAAAGAAAAGAAGGCTAAGAAGCCTAAACATAGTCGATCGAGATCCAT
GGAGAAATCTCAAAGGTCTGGTAAGAAGGCAAGCCGCAAACACAAGTCTAAGTCCCGATC
AAGGTAGTATACTTTTTAAAGTATTTTGTCTGATTTTTAAAAAAAAAAATTTGACTGAAT
TTATTCAAAGTTGAAAGTGTCCTTTCTCTCTCTCTCTTTAATAAACTCAATTTGGTACTG
ATAAATTATCATAGTCTTAAGTAATTTTAGAAATCCTATATAATATTATTTATTTGAAAA
TTGCAGATTCTTTAGTGTAAAATACATTTTTATTTTTAAATTTTATCTTTTCCCTTTCTT
TTTTTCAGATCAACAACCCCTCCCCGTCGTAAACGCTGAGGAATGATGTGGCAAGAATGC
CATGATGTTTAAAAAATTCCATGAGTTTTAAGGGCTTGTCTCATTATAGAGGCACATTGT
GGCTGTGTAGGTGAAACCAGAATCTTTTTTTTTTTTTTTTTTTTAAATCTGTAAATAGGT
GTACTTTTTCCAAATGCTGCTCCAAGTTACTTAATAGGATTTCTTTGTATTACATTTTTT
TCAAAAAAAAAAAAAATAGTGCATAATAAGACTATAAACATGCCATTCTCTTTCAGCTGT
AATGTTCTTAAAATTATTCTTGAATGTACTGTGATGTCAATAAAGCTCTTTAGTTCATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8TF00_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8TF00_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               253-372, + strand, RNAz p=0.578996

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               253-372, + strand, RNAz p=0.578996

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               22-416, gnl|bosTau2|chr9 (33691866-33691472)
               

               
               22-416, gnl|Hg17|chr6 (99957531-99957137)
               

               
               22-416, gnl|Mm7|chr4 (21874875-21875265)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-416, gnl|bosTau2|chr9 (33691866-33691472)
               

               
               22-416, gnl|Hg17|chr6 (99957531-99957137)
               

               
               22-416, gnl|Mm7|chr4 (21874875-21875265)

Expressed library(ies): 39 entry(ies)

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Expressed library(ies): 39 entry(ies)

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               liv (0.585137)
               

               
               pro (0.512033)
               

               
               cbl (0.45919)
               

               
               csk (0.422238)
               

               
               sin (0.349895)
               

               
               eye (0.341006)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               nca (0.273748)
               

               
               nmm (0.265604)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               pan (0.23596)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 39 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.585137)
               

               
               pro (0.512033)
               

               
               cbl (0.45919)
               

               
               csk (0.422238)
               

               
               sin (0.349895)
               

               
               eye (0.341006)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               nca (0.273748)
               

               
               nmm (0.265604)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               pan (0.23596)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	22-416, gnl\|bosTau2\|chr9 (33691866-33691472)
	22-416, gnl\|Hg17\|chr6 (99957531-99957137)
	22-416, gnl\|Mm7\|chr4 (21874875-21875265)

	liv (0.585137)
	pro (0.512033)
	cbl (0.45919)
	csk (0.422238)
	sin (0.349895)
	eye (0.341006)
	ski (0.29347)
	spl (0.286369)
	nca (0.273748)
	nmm (0.265604)
	sug (0.254582)
	thg (0.253582)
	tra (0.246184)
	pan (0.23596)
	med (0.232504)
	ece (0.229305)
	nms (0.213858)
	hea (0.204499)
	aor (0.195274)
	sag (0.182715)
	gul (0.177588)
	fty (0.17584)
	duo (0.172801)
	fhi (0.169578)
	nje (0.16592)
	tbr (0.154178)
	isp (0.150376)
	bfe (0.149858)
	fat (0.147427)
	pty (0.142714)
	hlv (0.139256)
	ssp (0.13552)
	pla (0.133672)
	lyg (0.133103)
	kid (0.129735)
	ova (0.129132)
	pgl (0.118483)
	spc (0.113366)
	jej (0.0989218)