Ss1.1-rlyg10_f9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCAGACCAGGCTGAGAACAACGGCCTCATTGACGCTTTCGGGGCCCTTTCGTCCGGGA ACGGAGCTGTCTCCCAGCGCTCCATCCAGCTGGAGAGCAGGGGCTTAACCCTCCAGAACA ACGAGTGGATGAATGGCACAGTGGTGGTGGACAGCACTGTGGGGAAGGACACTTTGTTTC TCATCACCTGGACCGACGTCCCTCCCCAAATCCTTCTCTGGGATCCCAGCGGAACGAAGC AGGACAGCTTCTTGGTGGACACACACAACAAGATGGCCTACCTCCAAGTCCCAGGCACGG CCAAGGTTGGCATGTGGAAGTACAGCCTGCAAGCAAGTTCACAAACCCTGACTTTGACCG TCAGCTCCCGTGCGTCCAGCGCTACCCTGCCTCCGGTTACCGTGACCTCTAAAATGAACA AAGACACGGGCAAATTCCCCAGCCCCATGGTAGTTTACACGAAGATTCACCAAGGAACCC TGCCCATTCTCAGGGCCAAGGTCACAGCCCTGATAGAATCAGAGAATGGGAAAACAGTTA CCTTGGAATTACTGGACAACGGAGCAGGCGCTGATGCTACCAAGAATGACGGTATCTACT CGAGGTATTTTACAGCTTACGATGCAAATGGTCGATACAGCGTAAAAGTGTGGGCTCTGG GAGGAGTGAACACGGCCACGCAGAAGGCGACCCCCCCTCGGAGTGGAGCCATGTACATAC GTGGCTGGATTGAGAATGGGGAGATCAAATGGAACCCGCCGAGACCCGACATTAACAAGG ACGACCTTCAGGGCAAGCAAGTGTGTTTCAGCCGAACAGCCTCGGGGGGTTCATTCGTGG CCTCCGACGTTCCGAAGTCTCCCGTACCCGATCTCTTTCCACCCTGTAAGATCACCGACC TGAAGGCCGGGATCCAAGGGGACAACCTCATCAACCTGACGTGGACGGCTCCTGGGGATG ATTACGACCACGGGCGAGCTGACAGGTACATCATCAGAATAAGCACAAATATTCTTGATC TCAGAGACAAGTTCAATGATTCTGTTCAAGTGAACACCACGGATCTCATCCCAAAGGAGG CCAACTCAGAGGAGGTCTTTGTGTTTAAACCAGAAGGCATCCCTTTTACAAATGGCACGG ATCTCTTCATTGCTGTACAGGCTGTCGATAAGACCAACCTGAAGTCAGAAATCTCCAACA TTGCACAAGTATCTTTGTTCCTTCCCCCGGAGGCTCCTCCGGAGACTCCTCCGGAGACAC CTGCTCCTTCTCTGCCTTGTCCTGAAATTCAGGTCAACAGCACCATTCCTGGCATTCACA TTTTAAAAATTATGTGGAAGTGGCTGGGAGAATTACAGCTATCGATAGCCTAGGGCTGAG TTTTCCTGAGATAAACAAATCATCCATCCTGCTTTTGATTATGAAAATTTATAAAATGCA TTTTAGACTTTCTGCACGAGGCAATTTAATGAAATACAATGCTAAACAACTAGATATGTA CGTATAAAAGCTATTCATGTCAATAAATAGAAGTATGTTTTAATTCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCAGACCAGGCTGAGAACAACGGCCTCATTGACGCTTTCGGGGCCCTTTCGTCCGGGA ACGGAGCTGTCTCCCAGCGCTCCATCCAGCTGGAGAGCAGGGGCTTAACCCTCCAGAACA ACGAGTGGATGAATGGCACAGTGGTGGTGGACAGCACTGTGGGGAAGGACACTTTGTTTC TCATCACCTGGACCGACGTCCCTCCCCAAATCCTTCTCTGGGATCCCAGCGGAACGAAGC AGGACAGCTTCTTGGTGGACACACACAACAAGATGGCCTACCTCCAAGTCCCAGGCACGG CCAAGGTTGGCATGTGGAAGTACAGCCTGCAAGCAAGTTCACAAACCCTGACTTTGACCG TCAGCTCCCGTGCGTCCAGCGCTACCCTGCCTCCGGTTACCGTGACCTCTAAAATGAACA AAGACACGGGCAAATTCCCCAGCCCCATGGTAGTTTACACGAAGATTCACCAAGGAACCC TGCCCATTCTCAGGGCCAAGGTCACAGCCCTGATAGAATCAGAGAATGGGAAAACAGTTA CCTTGGAATTACTGGACAACGGAGCAGGCGCTGATGCTACCAAGAATGACGGTATCTACT CGAGGTATTTTACAGCTTACGATGCAAATGGTCGATACAGCGTAAAAGTGTGGGCTCTGG GAGGAGTGAACACGGCCACGCAGAAGGCGACCCCCCCTCGGAGTGGAGCCATGTACATAC GTGGCTGGATTGAGAATGGGGAGATCAAATGGAACCCGCCGAGACCCGACATTAACAAGG ACGACCTTCAGGGCAAGCAAGTGTGTTTCAGCCGAACAGCCTCGGGGGGTTCATTCGTGG CCTCCGACGTTCCGAAGTCTCCCGTACCCGATCTCTTTCCACCCTGTAAGATCACCGACC TGAAGGCCGGGATCCAAGGGGACAACCTCATCAACCTGACGTGGACGGCTCCTGGGGATG ATTACGACCACGGGCGAGCTGACAGGTACATCATCAGAATAAGCACAAATATTCTTGATC TCAGAGACAAGTTCAATGATTCTGTTCAAGTGAACACCACGGATCTCATCCCAAAGGAGG CCAACTCAGAGGAGGTCTTTGTGTTTAAACCAGAAGGCATCCCTTTTACAAATGGCACGG ATCTCTTCATTGCTGTACAGGCTGTCGATAAGACCAACCTGAAGTCAGAAATCTCCAACA TTGCACAAGTATCTTTGTTCCTTCCCCCGGAGGCTCCTCCGGAGACTCCTCCGGAGACAC CTGCTCCTTCTCTGCCTTGTCCTGAAATTCAGGTCAACAGCACCATTCCTGGCATTCACA TTTTAAAAATTATGTGGAAGTGGCTGGGAGAATTACAGCTATCGATAGCCTAGGGCTGAG TTTTCCTGAGATAAACAAATCATCCATCCTGCTTTTGATTATGAAAATTTATAAAATGCA TTTTAGACTTTCTGCACGAGGCAATTTAATGAAATACAATGCTAAACAACTAGATATGTA CGTATAAAAGCTATTCATGTCAATAAATAGAAGTATGTTTTAATTCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1287-1401, + strand, RNAz p=0.865779 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1287-1401, + strand, RNAz p=0.865779 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_001285, + |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 87-284, gnl|bosTau2|chr3 (42407224-42407421) | |
| 87-284, gnl|canFam2|chr6 (64624105-64623935) | |
| 87-284, gnl|danRer3|chr19 (56806871-56807014) | |
| 87-284, gnl|dasNov1|scaffold_4670 (9119-8949) | |
| 87-284, gnl|echTel1|scaffold_290505 (38303-38133) | |
| 87-284, gnl|galGal2|chr8 (16315332-16315153) | |
| 87-284, gnl|hg17|chr1 (86752242-86752412) | |
| 87-284, gnl|Hg17|chr1 (86752241-86752438) | |
| 87-284, gnl|loxAfr1|scaffold_31511 (16039-15869) | |
| 87-284, gnl|mm7|chr3 (144851270-144851100) | |
| 87-284, gnl|Mm7|chr3 (144851269-144851072) | |
| 87-284, gnl|monDom2|scaffold_123 (425941-426111) | |
| 87-284, gnl|oryCun1|scaffold_203982 (11691-11861) | |
| 87-284, gnl|panTro1|chr1 (85416608-85416778) | |
| 87-284, gnl|rheMac2|chr1 (89297418-89297588) | |
| 87-284, gnl|rn3|chr2 (242994117-242993947) | |
| 87-284, gnl|xenTro1|scaffold_74 (229307-229131) | |
| 304-568, gnl|bosTau2|chr3 (42351139-42351403) | |
| 304-568, gnl|canFam2|chr6 (64685796-64685514) | |
| 304-568, gnl|danRer3|chr19 (56807162-56807448) | |
| 304-568, gnl|dasNov1|scaffold_4670 (62067-61786) | |
| 304-568, gnl|echTel1|scaffold_324846 (31607-31890) | |
| 304-568, gnl|galGal2|chr8 (16314405-16314114) | |
| 304-568, gnl|hg17|chr1 (86671878-86672160) | |
| 304-568, gnl|Hg17|chr1 (86671889-86672153) | |
| 304-568, gnl|loxAfr1|scaffold_11911 (16935-17217) | |
| 304-568, gnl|mm7|chr3 (144902245-144901963) | |
| 304-568, gnl|Mm7|chr3 (144902232-144901968) | |
| 304-568, gnl|monDom2|scaffold_16 (212339-212054) | |
| 304-568, gnl|oryCun1|scaffold_178988 (36817-36535) | |
| 304-568, gnl|panTro1|chr1_random (79873966-79874248) | |
| 304-568, gnl|rheMac2|chr1 (89220618-89220901) | |
| 304-568, gnl|rn3|chr2 (243049184-243048902) | |
| 304-568, gnl|xenTro1|scaffold_74 (257140-256851) | |
| 977-1523, gnl|bosTau2|chr3 (42355002-42355524) | |
| 977-1523, gnl|Hg17|chr1 (86677356-86677989) | |
| 977-1523, gnl|Mm7|chr3 (144898148-144897616) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 87-284, gnl|bosTau2|chr3 (42407224-42407421) | |
| 87-284, gnl|canFam2|chr6 (64624105-64623935) | |
| 87-284, gnl|danRer3|chr19 (56806871-56807014) | |
| 87-284, gnl|dasNov1|scaffold_4670 (9119-8949) | |
| 87-284, gnl|echTel1|scaffold_290505 (38303-38133) | |
| 87-284, gnl|galGal2|chr8 (16315332-16315153) | |
| 87-284, gnl|hg17|chr1 (86752242-86752412) | |
| 87-284, gnl|Hg17|chr1 (86752241-86752438) | |
| 87-284, gnl|loxAfr1|scaffold_31511 (16039-15869) | |
| 87-284, gnl|mm7|chr3 (144851270-144851100) | |
| 87-284, gnl|Mm7|chr3 (144851269-144851072) | |
| 87-284, gnl|monDom2|scaffold_123 (425941-426111) | |
| 87-284, gnl|oryCun1|scaffold_203982 (11691-11861) | |
| 87-284, gnl|panTro1|chr1 (85416608-85416778) | |
| 87-284, gnl|rheMac2|chr1 (89297418-89297588) | |
| 87-284, gnl|rn3|chr2 (242994117-242993947) | |
| 87-284, gnl|xenTro1|scaffold_74 (229307-229131) | |
| 304-568, gnl|bosTau2|chr3 (42351139-42351403) | |
| 304-568, gnl|canFam2|chr6 (64685796-64685514) | |
| 304-568, gnl|danRer3|chr19 (56807162-56807448) | |
| 304-568, gnl|dasNov1|scaffold_4670 (62067-61786) | |
| 304-568, gnl|echTel1|scaffold_324846 (31607-31890) | |
| 304-568, gnl|galGal2|chr8 (16314405-16314114) | |
| 304-568, gnl|hg17|chr1 (86671878-86672160) | |
| 304-568, gnl|Hg17|chr1 (86671889-86672153) | |
| 304-568, gnl|loxAfr1|scaffold_11911 (16935-17217) | |
| 304-568, gnl|mm7|chr3 (144902245-144901963) | |
| 304-568, gnl|Mm7|chr3 (144902232-144901968) | |
| 304-568, gnl|monDom2|scaffold_16 (212339-212054) | |
| 304-568, gnl|oryCun1|scaffold_178988 (36817-36535) | |
| 304-568, gnl|panTro1|chr1_random (79873966-79874248) | |
| 304-568, gnl|rheMac2|chr1 (89220618-89220901) | |
| 304-568, gnl|rn3|chr2 (243049184-243048902) | |
| 304-568, gnl|xenTro1|scaffold_74 (257140-256851) | |
| 977-1523, gnl|bosTau2|chr3 (42355002-42355524) | |
| 977-1523, gnl|Hg17|chr1 (86677356-86677989) | |
| 977-1523, gnl|Mm7|chr3 (144898148-144897616) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| pty (1.71257) | |
| col (1.56006) | |
| duo (0.691204) | |
| cje (0.660939) | |
| tra (0.61546) | |
| clu (0.598229) | |
| nco (0.485201) | |
| jej (0.395687) | |
| sin (0.349895) | |
| lyg (0.266205) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| rec (0.17307) | |
| lin (0.145603) | |
| cst (0.140036) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (1.71257) | |
| col (1.56006) | |
| duo (0.691204) | |
| cje (0.660939) | |
| tra (0.61546) | |
| clu (0.598229) | |
| nco (0.485201) | |
| jej (0.395687) | |
| sin (0.349895) | |
| lyg (0.266205) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| rec (0.17307) | |
| lin (0.145603) | |
| cst (0.140036) |