Non-Coding RNA Search

Ss1.1-rlyg11_f10.5

Sequence:


               
               CGTTGAGAAGCGGACGGTTCCAAGTGGGCCACAGCGAGGGGGGAAGCGGGCCTGTACGCG
AAGACCGCGGTGCCCTGTGCACCGAAGGACTGGAATTCTGGCCGCGGCTCCTAGGAGAGG
CCTGGTTCCGCGGGACAGCGTGGACTGACCTGTGCCTAGAGCCCATCCCAGCACGCGGAG
TCTGTTGCGAGTCCCGGGCGTCCCCTCCGGCGCGCTCTTGGAGCCACTTTCCCGAGCGGA
AGTCCGCCTGCGGCTCGGGCCCTGGTGGGACCTGCTCGGAGGAATGGCGCCGCCGGGTTC
AAGCACTGTCTTGCTGTTGGCCCTGACAATCATAGCCAGCGCCCAGGCTCTGACGCCCAC
CCACTACCTCACCAAGCATGATGTGGAGAGACTGAAAGCCTCACTGGACCGCCCTTTCAC
AAGTTTGGAATCTGCTTTCTACTCCATTGTGGGACTCAGCAGCCTTGGTGCCCAGGTGCC
AGATGAAAAGAAAGCGTGCACCTTCATTAAGTCAAACCTTGATCCCAGCAACGTGGATTC
CCTTTTCTACGCTGCCCAGTCCAGCCAGGCCCTCTCAGGGTGTGAGATCTCTATTTCAAA
TGAGACCAAAGATCTGCTTCTGGCAGCTGTCAGTGAAGACTCCTCTGTGACCCAGATCTA
CCATGCAGTTGCAGCTCTCAGTGGCTTTGGCCTTCCCTTGGCTTCCCAAGAAGCGCTCGG
TGCTCTCACTGCTCGCCTCAGCAAGGAAGAGACCGTGCTAGCAACGGTCCAGGCTCTGCA
GACAGCATCCTACCTGTCCCAGCAGGCTGACCTGAGAAGCATCGTGGAGGAGATTGAGGA
CCTTGTCGCTCGCCTGGATGAACTGGGAGGTGTGTATCTCCAGTTTGAAGAAGGACTGGA
AACAACAGCGTTATTTGTAGCTGCCACCTACAAGCTCATGGACCACGTGGGGACTGAGCC
GTCCATTAAGGAGGATCAGGTCATCCAGCTAATGAACACCATCTTTAGCAAGAAGAACTT
TGAGTCACTCCCAGAAGCCTTCAGTGTGGCCTCTGCTGCCGCTGCACTCTCCCAGAATCG
CTACCATGTGCCTGTTGTGGTTGTGCCTGAAGGCTCTCCTTCCGACACTCAGGAACAGGC
TTTCCTGCGGTTGCAGGTCACCAACGTTCTGTCCCAGCCTCTGACTCAGGCCACTGTTAA
ACTAGAACATGCTAAGTCTGTTGCTTCCAGAGCCACGGTCCTCCAGAAGACGTCTTTCAC
CCCTGTGGGAGATGTTTTTGAGCTAAACTTCGTGAATGTCAAGTTTTCCAGTGGTTATTA
TGACTTTTCTGTCAAAGTTGAGGGTGACAATCGTTATATTGCAAATACTGTAGAGCTTAG
AGTCAAGATTTCCACTGAAGTTGGCATCACAAATGTTGATCTCTCCACTGTGGATAAGGA
TCAGAGCATTGCACCCAAAACCACACGGGTGACCTACCCAGCCAAGGCCAAGGGCGCTTT
CATCGCAGACAGCCACCAGAACTTTGCTTTATTCTTCCAGCTGGTAGATGTGAACACTGG
TGCTGAACTCACCCCTCACCAGACATTTGTCCGACTCCACAACCAGAAGACTGGCCAGGA
AGTGGTGTTTGTCGCAGAGCCAGACAGCAAGAATGTGTACAGGTTTGAACTGGATACCTC
CGAGAGAAAGATTGAGTTTGACTCTGCATCCGGCACCTACACTCTCTACTTGATCATCGG
AGATGCTACTTTGAAGAACCCAATCCATTGGAATGTGGCTGATGTTGTCATCAGGTTCCC
TGAAGAAGATGCTCCGTCGACTGTCCTGTCCAAGAACCTTTTCACTGCCAAACAGGAAAT
TCAGCATCTGTTCCGCGAGCCTGAGAAGAGGCCTCCCACGGTGGTGTCCAATACATTCAC
TGCCCTGATCCTCTCGCCCTTGCTCCTGCTCTTTGCTCTGTGGATCCGGATTGGTGCCAA
CATCTCCAACTTCACTTTTGCGCCTAGCACGATTATATTTCACCTGGGACATGCTGCTAT
GCTGGGGCTCATGTATGTCTACTGGACTCAACTCAACATGTTCCAGACCCTGAAATACCT
GGCCATCCTGGGCAGTGTGACATTTTTGGCTGGCAATCGGATGCTGGCCCAGCAGGCAAT
CAAGAGAACAGCACATTAGCTCCAGAAAAAGGAAGGAGATTCTGAAAGCTGAAGTGAATA
TCAAGACAAGGAGTCAAGAACAATTCACGGTTTGAAAAGAGGGATTTTTAAAAAGTTTAT
TTAAAAAGAAAAAAGTTAAAATTGTGGTTATACTTTTGCTTGTATTTCTATTTCCCTGAC
ACAGAGCAGATAGATACCTGTGAGCCCAGATCCTCTCTTCTTTGGCATGGGGCCCTAGCA
AGATGCTGTGAATATTCTAACTTACCCACATGTTGCGTTGAAAAGTTGAAATCTGTAATT
AAGCTATTATGGAATAAAAAGAATAACAGGAACAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTTGAGAAGCGGACGGTTCCAAGTGGGCCACAGCGAGGGGGGAAGCGGGCCTGTACGCG
AAGACCGCGGTGCCCTGTGCACCGAAGGACTGGAATTCTGGCCGCGGCTCCTAGGAGAGG
CCTGGTTCCGCGGGACAGCGTGGACTGACCTGTGCCTAGAGCCCATCCCAGCACGCGGAG
TCTGTTGCGAGTCCCGGGCGTCCCCTCCGGCGCGCTCTTGGAGCCACTTTCCCGAGCGGA
AGTCCGCCTGCGGCTCGGGCCCTGGTGGGACCTGCTCGGAGGAATGGCGCCGCCGGGTTC
AAGCACTGTCTTGCTGTTGGCCCTGACAATCATAGCCAGCGCCCAGGCTCTGACGCCCAC
CCACTACCTCACCAAGCATGATGTGGAGAGACTGAAAGCCTCACTGGACCGCCCTTTCAC
AAGTTTGGAATCTGCTTTCTACTCCATTGTGGGACTCAGCAGCCTTGGTGCCCAGGTGCC
AGATGAAAAGAAAGCGTGCACCTTCATTAAGTCAAACCTTGATCCCAGCAACGTGGATTC
CCTTTTCTACGCTGCCCAGTCCAGCCAGGCCCTCTCAGGGTGTGAGATCTCTATTTCAAA
TGAGACCAAAGATCTGCTTCTGGCAGCTGTCAGTGAAGACTCCTCTGTGACCCAGATCTA
CCATGCAGTTGCAGCTCTCAGTGGCTTTGGCCTTCCCTTGGCTTCCCAAGAAGCGCTCGG
TGCTCTCACTGCTCGCCTCAGCAAGGAAGAGACCGTGCTAGCAACGGTCCAGGCTCTGCA
GACAGCATCCTACCTGTCCCAGCAGGCTGACCTGAGAAGCATCGTGGAGGAGATTGAGGA
CCTTGTCGCTCGCCTGGATGAACTGGGAGGTGTGTATCTCCAGTTTGAAGAAGGACTGGA
AACAACAGCGTTATTTGTAGCTGCCACCTACAAGCTCATGGACCACGTGGGGACTGAGCC
GTCCATTAAGGAGGATCAGGTCATCCAGCTAATGAACACCATCTTTAGCAAGAAGAACTT
TGAGTCACTCCCAGAAGCCTTCAGTGTGGCCTCTGCTGCCGCTGCACTCTCCCAGAATCG
CTACCATGTGCCTGTTGTGGTTGTGCCTGAAGGCTCTCCTTCCGACACTCAGGAACAGGC
TTTCCTGCGGTTGCAGGTCACCAACGTTCTGTCCCAGCCTCTGACTCAGGCCACTGTTAA
ACTAGAACATGCTAAGTCTGTTGCTTCCAGAGCCACGGTCCTCCAGAAGACGTCTTTCAC
CCCTGTGGGAGATGTTTTTGAGCTAAACTTCGTGAATGTCAAGTTTTCCAGTGGTTATTA
TGACTTTTCTGTCAAAGTTGAGGGTGACAATCGTTATATTGCAAATACTGTAGAGCTTAG
AGTCAAGATTTCCACTGAAGTTGGCATCACAAATGTTGATCTCTCCACTGTGGATAAGGA
TCAGAGCATTGCACCCAAAACCACACGGGTGACCTACCCAGCCAAGGCCAAGGGCGCTTT
CATCGCAGACAGCCACCAGAACTTTGCTTTATTCTTCCAGCTGGTAGATGTGAACACTGG
TGCTGAACTCACCCCTCACCAGACATTTGTCCGACTCCACAACCAGAAGACTGGCCAGGA
AGTGGTGTTTGTCGCAGAGCCAGACAGCAAGAATGTGTACAGGTTTGAACTGGATACCTC
CGAGAGAAAGATTGAGTTTGACTCTGCATCCGGCACCTACACTCTCTACTTGATCATCGG
AGATGCTACTTTGAAGAACCCAATCCATTGGAATGTGGCTGATGTTGTCATCAGGTTCCC
TGAAGAAGATGCTCCGTCGACTGTCCTGTCCAAGAACCTTTTCACTGCCAAACAGGAAAT
TCAGCATCTGTTCCGCGAGCCTGAGAAGAGGCCTCCCACGGTGGTGTCCAATACATTCAC
TGCCCTGATCCTCTCGCCCTTGCTCCTGCTCTTTGCTCTGTGGATCCGGATTGGTGCCAA
CATCTCCAACTTCACTTTTGCGCCTAGCACGATTATATTTCACCTGGGACATGCTGCTAT
GCTGGGGCTCATGTATGTCTACTGGACTCAACTCAACATGTTCCAGACCCTGAAATACCT
GGCCATCCTGGGCAGTGTGACATTTTTGGCTGGCAATCGGATGCTGGCCCAGCAGGCAAT
CAAGAGAACAGCACATTAGCTCCAGAAAAAGGAAGGAGATTCTGAAAGCTGAAGTGAATA
TCAAGACAAGGAGTCAAGAACAATTCACGGTTTGAAAAGAGGGATTTTTAAAAAGTTTAT
TTAAAAAGAAAAAAGTTAAAATTGTGGTTATACTTTTGCTTGTATTTCTATTTCCCTGAC
ACAGAGCAGATAGATACCTGTGAGCCCAGATCCTCTCTTCTTTGGCATGGGGCCCTAGCA
AGATGCTGTGAATATTCTAACTTACCCACATGTTGCGTTGAAAAGTTGAAATCTGTAATT
AAGCTATTATGGAATAAAAAGAATAACAGGAACAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               RIB2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               RIB2_HUMAN

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               2321-2506, gnl|bosTau2|chr3 (82537970-82538152)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2321-2506, gnl|bosTau2|chr3 (82537970-82538152)

Expressed library(ies): 68 entry(ies)

More info

Expressed library(ies): 68 entry(ies)

Help | Less info


               
               cte (2.34192)
               

               
               sto (1.61841)
               

               
               cty (1.14488)
               

               
               cmu (1.11836)
               

               
               cov (0.925069)
               

               
               sug (0.891039)
               

               
               amn (0.835422)
               

               
               tes (0.831255)
               

               
               col (0.780031)
               

               
               pgl (0.7109)
               

               
               ute (0.663922)
               

               
               hea (0.613497)
               

               
               bfe (0.599431)
               

               
               duo (0.518403)
               

               
               pro (0.512033)
               

               
               thg (0.507164)
               

               
               eep (0.490256)
               

               
               cbe (0.478469)
               

               
               jca (0.45584)
               

               
               pty (0.428143)
               

               
               csk (0.422238)
               

               
               lyg (0.399308)
               

               
               nbm (0.397298)
               

               
               fcc (0.39557)
               

               
               aor (0.390549)
               

               
               nep (0.36785)
               

               
               cly (0.361925)
               

               
               gul (0.355177)
               

               
               ill (0.351185)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               cje (0.330469)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               cag (0.302389)
               

               
               ski (0.29347)
               

               
               cst (0.280073)
               

               
               ste (0.270416)
               

               
               ova (0.258264)
               

               
               clu (0.239292)
               

               
               ebs (0.236602)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

Expressed library(ies): 68 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (2.34192)
               

               
               sto (1.61841)
               

               
               cty (1.14488)
               

               
               cmu (1.11836)
               

               
               cov (0.925069)
               

               
               sug (0.891039)
               

               
               amn (0.835422)
               

               
               tes (0.831255)
               

               
               col (0.780031)
               

               
               pgl (0.7109)
               

               
               ute (0.663922)
               

               
               hea (0.613497)
               

               
               bfe (0.599431)
               

               
               duo (0.518403)
               

               
               pro (0.512033)
               

               
               thg (0.507164)
               

               
               eep (0.490256)
               

               
               cbe (0.478469)
               

               
               jca (0.45584)
               

               
               pty (0.428143)
               

               
               csk (0.422238)
               

               
               lyg (0.399308)
               

               
               nbm (0.397298)
               

               
               fcc (0.39557)
               

               
               aor (0.390549)
               

               
               nep (0.36785)
               

               
               cly (0.361925)
               

               
               gul (0.355177)
               

               
               ill (0.351185)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               cje (0.330469)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               cag (0.302389)
               

               
               ski (0.29347)
               

               
               cst (0.280073)
               

               
               ste (0.270416)
               

               
               ova (0.258264)
               

               
               clu (0.239292)
               

               
               ebs (0.236602)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

	cte (2.34192)
	sto (1.61841)
	cty (1.14488)
	cmu (1.11836)
	cov (0.925069)
	sug (0.891039)
	amn (0.835422)
	tes (0.831255)
	col (0.780031)
	pgl (0.7109)
	ute (0.663922)
	hea (0.613497)
	bfe (0.599431)
	duo (0.518403)
	pro (0.512033)
	thg (0.507164)
	eep (0.490256)
	cbe (0.478469)
	jca (0.45584)
	pty (0.428143)
	csk (0.422238)
	lyg (0.399308)
	nbm (0.397298)
	fcc (0.39557)
	aor (0.390549)
	nep (0.36785)
	cly (0.361925)
	gul (0.355177)
	ill (0.351185)
	rec (0.346141)
	vin (0.332557)
	cje (0.330469)
	fco (0.314416)
	tbr (0.308356)
	cag (0.302389)
	ski (0.29347)
	cst (0.280073)
	ste (0.270416)
	ova (0.258264)
	clu (0.239292)
	ebs (0.236602)
	mgp (0.230681)
	ece (0.229305)
	spc (0.226732)
	mas (0.210305)
	fli (0.202881)
	ldo (0.194005)
	nlu (0.191681)
	fty (0.17584)
	sin (0.174948)
	nje (0.16592)
	cki (0.165235)
	nco (0.161734)
	eli (0.151814)
	isp (0.150376)
	spl (0.143184)
	lnt (0.142308)
	hlv (0.139256)
	che (0.136314)
	ssp (0.13552)
	kid (0.129735)
	ret (0.128733)
	bla (0.124347)
	tra (0.123092)
	eru (0.120048)
	med (0.116252)
	cbl (0.114797)
	jej (0.0989218)