Non-Coding RNA Search

Ss1.1-rlyg12_i21.5

Sequence:


               
               TAGTTTACAGCAGAATTTTTAACATAATTGTTAGGCTTTAGAATTGCATTGTTTGAAAAG
ATCCTTTTAATGTCAACTTTATTCAAATGTGTGTGAAGTCTGCTTTCTAATTTCACCTGA
TAATACATTAGGGGTGGACTTTTCTGCCTGCCATTTCTGCATTTTTAAAAATCCTCATTT
AAGGTTTAGAGTTCTTTTGGTTAAAATTCCTATGATGTTTTATTGTTAATATGAAGTTTA
TTAAACAGAATTCAAAATTTCAATATATAGTACATTTTATGGTACATTTTTGAAAAGAAT
TTTTGTAATCCTTAGTTTAAAAAAATTAACAAAAGGAAGCTACTGACATTAAATTCAATT
TATTCAGTATGTGTTAGATATGACACATGCCAAACACTGTTTGATAAAGGAGACAGGCTC
CCTTCTCTCAAGGAGTACAACCTGAGAAGCAGCAGCAACCAGAACTGGGACGAGGGTTAA
GGCAAAGAACCACAAGAAATGCAGCACTGTGAGTGTATTGGGGGAGAATAAAGAGAGAGC
AATTCATTTTGTCTGGTGTGAGAAGATGGTCATATAAATACAGGGGCAGTTTGACAGCAT
TCACTCTGATTTGTGAACAGGTGCAGAAAAAAGCCTGCATCATGTTACATATTTATAGTA
GTTCTTTGTAAAAATGTTAAGTGGATGAGCTATTATGAAAGCAAAAGTTCCAATTTGTAT
TTCTCATTAAAATTAGTACTATATTACTGTGGATTAGATGTGAATATTTAAGAATACTCT
GTAGAAAAAAAGGTTTCGACCTGAATTAACATATGTACTATTAATATAGAAATAAATGTT
ATCTTGGATCCTGAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGTTTACAGCAGAATTTTTAACATAATTGTTAGGCTTTAGAATTGCATTGTTTGAAAAG
ATCCTTTTAATGTCAACTTTATTCAAATGTGTGTGAAGTCTGCTTTCTAATTTCACCTGA
TAATACATTAGGGGTGGACTTTTCTGCCTGCCATTTCTGCATTTTTAAAAATCCTCATTT
AAGGTTTAGAGTTCTTTTGGTTAAAATTCCTATGATGTTTTATTGTTAATATGAAGTTTA
TTAAACAGAATTCAAAATTTCAATATATAGTACATTTTATGGTACATTTTTGAAAAGAAT
TTTTGTAATCCTTAGTTTAAAAAAATTAACAAAAGGAAGCTACTGACATTAAATTCAATT
TATTCAGTATGTGTTAGATATGACACATGCCAAACACTGTTTGATAAAGGAGACAGGCTC
CCTTCTCTCAAGGAGTACAACCTGAGAAGCAGCAGCAACCAGAACTGGGACGAGGGTTAA
GGCAAAGAACCACAAGAAATGCAGCACTGTGAGTGTATTGGGGGAGAATAAAGAGAGAGC
AATTCATTTTGTCTGGTGTGAGAAGATGGTCATATAAATACAGGGGCAGTTTGACAGCAT
TCACTCTGATTTGTGAACAGGTGCAGAAAAAAGCCTGCATCATGTTACATATTTATAGTA
GTTCTTTGTAAAAATGTTAAGTGGATGAGCTATTATGAAAGCAAAAGTTCCAATTTGTAT
TTCTCATTAAAATTAGTACTATATTACTGTGGATTAGATGTGAATATTTAAGAATACTCT
GTAGAAAAAAAGGTTTCGACCTGAATTAACATATGTACTATTAATATAGAAATAAATGTT
ATCTTGGATCCTGAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               2-601, gnl|bosTau2|chr10 (51632448-51631844)
               

               
               2-601, gnl|Hg17|chr14 (64010093-64010702)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-601, gnl|bosTau2|chr10 (51632448-51631844)
               

               
               2-601, gnl|Hg17|chr14 (64010093-64010702)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               lyg (0.266205)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               spc (0.113366)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.266205)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               spc (0.113366)

	2-601, gnl\|bosTau2\|chr10 (51632448-51631844)
	2-601, gnl\|Hg17\|chr14 (64010093-64010702)

	lyg (0.266205)
	aor (0.195274)
	gul (0.177588)
	fbs (0.175346)
	fco (0.157208)
	csk (0.140746)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)
	med (0.116252)
	spc (0.113366)