Non-Coding RNA Search

Ss1.1-rlyg12_o5.5

Sequence:


               
               ACTTGAAGAATTCTGTCCACTTGTATTAGCTTAATCCAGCAGATGATATTGTGCGGTTAC
TGTTTGTGTCTTTGATGTTGCTGTGTCCCTCAGATTTTAGTAGTTTATACAGAGCAAGAA
CACACATCCAAATGGAATTTCACCCCGAGAAATTCCCATTTTAAAGGGCATAGCACAGCA
CTCTGCAACAATATGTAAAGTTGAAATTGATTATAATAAAACTAGTCTCAATTCCAGTCT
GAACTGAAAATGTCAGATCATTTTGTATTATCTCTTTTCATCTTTATGTGAAGCCAGTTA
TAGAATGTTTAACAGTAAATTGTGCTGTACATGTAAATGTCCTTACCAACTAAATGATGT
AAAACTTTCTTAAAGTAATTTTAGTGTTCATTTATTTATAACTTCTACCACGTGATTTCC
AGAATATTGGAAGTAATTTACTGTATCTTGTGATATATGAGTTTTAACAAATTCTAGTCT
TCACGCTGAGGGAGCACTACTTGAGAGAGCAATCGAAAAGTTTCCAAAACTTTGATTCAG
TCTGAAGAAGGGAAGCTGGAACTGTCTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAA
CTCTCCATTATAGCTTTTACGCGGTGCGGATGTACAGCACATCCAAGGCGGCCACAGCTG
TGGTGGAGCTTGGTAAGACGGAAGGTACAATGGTGCTTTGATGAAAACGGTCAGTTGGCT
GGTCCCTCTCTCAAAAAGCTTATTGAGCCCCCAAGCCAACTTTGTAACATATTTAAAACT
GCTATTTTCGCTTATTTCTGGAATGTAAAAAAATGTATAAAAAGAATTAGTGTATGCTTC
CTGAATAAAACGGAGCCAAAGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTGAAGAATTCTGTCCACTTGTATTAGCTTAATCCAGCAGATGATATTGTGCGGTTAC
TGTTTGTGTCTTTGATGTTGCTGTGTCCCTCAGATTTTAGTAGTTTATACAGAGCAAGAA
CACACATCCAAATGGAATTTCACCCCGAGAAATTCCCATTTTAAAGGGCATAGCACAGCA
CTCTGCAACAATATGTAAAGTTGAAATTGATTATAATAAAACTAGTCTCAATTCCAGTCT
GAACTGAAAATGTCAGATCATTTTGTATTATCTCTTTTCATCTTTATGTGAAGCCAGTTA
TAGAATGTTTAACAGTAAATTGTGCTGTACATGTAAATGTCCTTACCAACTAAATGATGT
AAAACTTTCTTAAAGTAATTTTAGTGTTCATTTATTTATAACTTCTACCACGTGATTTCC
AGAATATTGGAAGTAATTTACTGTATCTTGTGATATATGAGTTTTAACAAATTCTAGTCT
TCACGCTGAGGGAGCACTACTTGAGAGAGCAATCGAAAAGTTTCCAAAACTTTGATTCAG
TCTGAAGAAGGGAAGCTGGAACTGTCTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAA
CTCTCCATTATAGCTTTTACGCGGTGCGGATGTACAGCACATCCAAGGCGGCCACAGCTG
TGGTGGAGCTTGGTAAGACGGAAGGTACAATGGTGCTTTGATGAAAACGGTCAGTTGGCT
GGTCCCTCTCTCAAAAAGCTTATTGAGCCCCCAAGCCAACTTTGTAACATATTTAAAACT
GCTATTTTCGCTTATTTCTGGAATGTAAAAAAATGTATAAAAAGAATTAGTGTATGCTTC
CTGAATAAAACGGAGCCAAAGTTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-193, + strand, RNAz p=0.713092
               

               
               753-864, + strand, RNAz p=0.685471

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-193, + strand, RNAz p=0.713092
               

               
               753-864, + strand, RNAz p=0.685471

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of NM_017544, +
               

               
               5' of NM_017544, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_017544, +
               

               
               5' of NM_017544, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-223, gnl|bosTau2|chrX (1041302-1041078)
               

               
               3-223, gnl|Hg17|chrX (118505056-118504838)
               

               
               3-223, gnl|Mm7|chrX (31648174-31647957)
               


               
               224-864, gnl|bosTau2|chrX (1040966-1040328)
               

               
               224-864, gnl|Hg17|chrX (118504835-118504189)
               

               
               224-864, gnl|Mm7|chrX (31647946-31647310)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-223, gnl|bosTau2|chrX (1041302-1041078)
               

               
               3-223, gnl|Hg17|chrX (118505056-118504838)
               

               
               3-223, gnl|Mm7|chrX (31648174-31647957)
               


               
               224-864, gnl|bosTau2|chrX (1040966-1040328)
               

               
               224-864, gnl|Hg17|chrX (118504835-118504189)
               

               
               224-864, gnl|Mm7|chrX (31647946-31647310)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cbe (0.239234)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               med (0.116252)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               med (0.116252)

	80-193, + strand, RNAz p=0.713092
	753-864, + strand, RNAz p=0.685471

	3-223, gnl\|bosTau2\|chrX (1041302-1041078)
	3-223, gnl\|Hg17\|chrX (118505056-118504838)
	3-223, gnl\|Mm7\|chrX (31648174-31647957)

	224-864, gnl\|bosTau2\|chrX (1040966-1040328)
	224-864, gnl\|Hg17\|chrX (118504835-118504189)
	224-864, gnl\|Mm7\|chrX (31647946-31647310)

	cbe (0.239234)
	lnt (0.142308)
	lyg (0.133103)
	sug (0.127291)
	ese (0.126502)
	med (0.116252)