Non-Coding RNA Search

Ss1.1-rlyg14_j16.5

Sequence:


               
               AAACAATCAAAT------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------AGTGAATGTGGC
AAAGCCTTCAGTCAGAGCATATGCCTTACTCGTCATCAGAGAAGTCATTCTGGAGCTAGA
CCTTATAAGTGCAATGATTGTGGGAAAGCCTTTAATCAGAGTGCATGCCTCATGCAGCAT
CAGAGAATCCACTCAGGAGAGAAGCCTTATACATGTACCAAATGTGGTAAAGCCTTCACT
CAGAACTCTTCCCTTGTTGAACATGACAGAACTCATACTGGAGAGAAACTTTATAAGTGT
AGTGAGTGTGAAAAAACCTTCCGCAAGCAAGCACACCTTAGTGAACATTATAGGATTCAC
ACTGGAGAGAAACCCTATGAATGTGCTGTCTGTGGGAAAGCCTTCAGGCACAGCTCAGCG
CTTGCTCGACATCAGAGGCTTCATGCTGGAGAATAAAACTTGGATATAACCATGGTAAAA
AGACGTGTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACAATCAAAT------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------AGTGAATGTGGC
AAAGCCTTCAGTCAGAGCATATGCCTTACTCGTCATCAGAGAAGTCATTCTGGAGCTAGA
CCTTATAAGTGCAATGATTGTGGGAAAGCCTTTAATCAGAGTGCATGCCTCATGCAGCAT
CAGAGAATCCACTCAGGAGAGAAGCCTTATACATGTACCAAATGTGGTAAAGCCTTCACT
CAGAACTCTTCCCTTGTTGAACATGACAGAACTCATACTGGAGAGAAACTTTATAAGTGT
AGTGAGTGTGAAAAAACCTTCCGCAAGCAAGCACACCTTAGTGAACATTATAGGATTCAC
ACTGGAGAGAAACCCTATGAATGTGCTGTCTGTGGGAAAGCCTTCAGGCACAGCTCAGCG
CTTGCTCGACATCAGAGGCTTCATGCTGGAGAATAAAACTTGGATATAACCATGGTAAAA
AGACGTGTGAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15489325|gb|AAH13762.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15489325|gb|AAH13762.1|

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-445, gnl|bosTau2|chr18 (51969599-51970036)
               

               
               1-445, gnl|Hg17|chr14 (50008716-50009329)
               

               
               1-445, gnl|Mm7|chr17 (19202530-19202978)
               


               
               11-431, gnl|bosTau2|chr16 (14627567-14627148)
               

               
               11-431, gnl|Mm7|chr11 (50879895-50879485)
               


               
               12-416, gnl|bosTau2|chr10 (8996745-8996341)
               

               
               12-416, gnl|Hg17|chr19 (42818550-42818062)
               

               
               12-416, gnl|Mm7|chr2 (127310176-127309772)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-445, gnl|bosTau2|chr18 (51969599-51970036)
               

               
               1-445, gnl|Hg17|chr14 (50008716-50009329)
               

               
               1-445, gnl|Mm7|chr17 (19202530-19202978)
               


               
               11-431, gnl|bosTau2|chr16 (14627567-14627148)
               

               
               11-431, gnl|Mm7|chr11 (50879895-50879485)
               


               
               12-416, gnl|bosTau2|chr10 (8996745-8996341)
               

               
               12-416, gnl|Hg17|chr19 (42818550-42818062)
               

               
               12-416, gnl|Mm7|chr2 (127310176-127309772)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pro (0.512033)
               

               
               lyg (0.133103)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               lyg (0.133103)

	1-445, gnl\|bosTau2\|chr18 (51969599-51970036)
	1-445, gnl\|Hg17\|chr14 (50008716-50009329)
	1-445, gnl\|Mm7\|chr17 (19202530-19202978)

	11-431, gnl\|bosTau2\|chr16 (14627567-14627148)
	11-431, gnl\|Mm7\|chr11 (50879895-50879485)

	12-416, gnl\|bosTau2\|chr10 (8996745-8996341)
	12-416, gnl\|Hg17\|chr19 (42818550-42818062)
	12-416, gnl\|Mm7\|chr2 (127310176-127309772)