Ss1.1-rlyg15_e21.5
|
ATCAGTACCTATATAGAATCTCTTTTCTTACCTGAAACTTTCACCCACTGGACGCTAGCT
AGAGCACATCCAAAAGAACAAGCCAGAAAGAGCAGCACTCTATAGTGTGTGCATGAGCTG
AGAATTTAGAATGTTTTGATAAGTAAACTGAATGTTGACTGGCAAACACTTTGTGTGGAA
GAGTATAAGAATGTTAGGAACAGTGGTGCTGAAATTGTTCTAAAATGAGGATTGTCTGTT
GTGGGAAACATTCAATGCTCTTGGACGCTAGGGAGGCTGTTGAATGTGTCACTTGGTCTG
AGTGGCTTCCCAGTATTCATAATTAGCAAACTGCCCTAGAATCAAAGGTTTGGTTCTTTA
GTTTGATTAGCTTTTTCATTATTTATTCAAAATGCTCAGTGTCTGCTGCAATTGGGGGAA
AATGCCTTTTGAAGACACAGTCTCTGAGCCTTAAAAAATGGCTGATGTTAATGGTACCGT
AAAATGCACTGCCAGCAGATTTGATAACTTTTCACTTCACTGTAGATGGTAACGTTTTCT
AAGAAAGATTTAGAGCCCAGCTGATTAAACATTAACGATTGTTTCGTTTACGGAATGGAA
ATCTAAAGCGTTTCTCCTTGAGAACACAGTGCTTTGGGTGTTTGTGGAAGCACCTTTTGG
AGAAGCTGCTTGAGGAGCTGATTTTCTGGGTTGTGCCAGATGCTCTTTTCTCCTTAAATG
CATTGTACATATTTTCCTTACAGTGTCTTCATTGATTGAATGGGTAGTATCTGTAGTAAT
ATTTTAGGTACCTGTTGGATTTTTAAAGGCAGGTTATTTATTTTCCAATGTGCTGCTGTA
ACTGAAAACCTGATAACTGGTCCAGCTGACTGTGCCTTCCATTGCTGTTGCTCTGTGCCA
CAACCGTTCATGTGTATTTGAAATAAAGAAGTTTAAGAAGCCATGTTGAATTCAAGACTC
CTTCTAATAAAAATAGGTAAAACTTCAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATCAGTACCTATATAGAATCTCTTTTCTTACCTGAAACTTTCACCCACTGGACGCTAGCT
AGAGCACATCCAAAAGAACAAGCCAGAAAGAGCAGCACTCTATAGTGTGTGCATGAGCTG
AGAATTTAGAATGTTTTGATAAGTAAACTGAATGTTGACTGGCAAACACTTTGTGTGGAA
GAGTATAAGAATGTTAGGAACAGTGGTGCTGAAATTGTTCTAAAATGAGGATTGTCTGTT
GTGGGAAACATTCAATGCTCTTGGACGCTAGGGAGGCTGTTGAATGTGTCACTTGGTCTG
AGTGGCTTCCCAGTATTCATAATTAGCAAACTGCCCTAGAATCAAAGGTTTGGTTCTTTA
GTTTGATTAGCTTTTTCATTATTTATTCAAAATGCTCAGTGTCTGCTGCAATTGGGGGAA
AATGCCTTTTGAAGACACAGTCTCTGAGCCTTAAAAAATGGCTGATGTTAATGGTACCGT
AAAATGCACTGCCAGCAGATTTGATAACTTTTCACTTCACTGTAGATGGTAACGTTTTCT
AAGAAAGATTTAGAGCCCAGCTGATTAAACATTAACGATTGTTTCGTTTACGGAATGGAA
ATCTAAAGCGTTTCTCCTTGAGAACACAGTGCTTTGGGTGTTTGTGGAAGCACCTTTTGG
AGAAGCTGCTTGAGGAGCTGATTTTCTGGGTTGTGCCAGATGCTCTTTTCTCCTTAAATG
CATTGTACATATTTTCCTTACAGTGTCTTCATTGATTGAATGGGTAGTATCTGTAGTAAT
ATTTTAGGTACCTGTTGGATTTTTAAAGGCAGGTTATTTATTTTCCAATGTGCTGCTGTA
ACTGAAAACCTGATAACTGGTCCAGCTGACTGTGCCTTCCATTGCTGTTGCTCTGTGCCA
CAACCGTTCATGTGTATTTGAAATAAAGAAGTTTAAGAAGCCATGTTGAATTCAAGACTC
CTTCTAATAAAAATAGGTAAAACTTCAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
307-637, gnl|bosTau2|chr11 (4000767-4001088) |
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307-637, gnl|canFam2|chr10 (47180249-47179959) |
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307-637, gnl|dasNov1|scaffold_7579 (14441-14740) |
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307-637, gnl|echTel1|scaffold_300865 (1706-1442) |
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307-637, gnl|galGal2|chr1 (125342019-125342325) |
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307-637, gnl|hg17|chr2 (98694441-98694753) |
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307-637, gnl|Hg17|chr2 (98694796-98694456) |
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307-637, gnl|loxAfr1|scaffold_14546 (4916-4612) |
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307-637, gnl|mm7|chr1 (37681038-37681253) |
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307-637, gnl|monDom2|scaffold_11 (14468565-14468802) |
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307-637, gnl|oryCun1|scaffold_201464 (32259-31968) |
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307-637, gnl|panTro1|chr12 (101404806-101405117) |
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307-637, gnl|rheMac2|chr13 (98509451-98509765) |
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307-637, gnl|rn3|chr9 (36385779-36385997) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
307-637, gnl|bosTau2|chr11 (4000767-4001088) |
|
307-637, gnl|canFam2|chr10 (47180249-47179959) |
|
307-637, gnl|dasNov1|scaffold_7579 (14441-14740) |
|
307-637, gnl|echTel1|scaffold_300865 (1706-1442) |
|
307-637, gnl|galGal2|chr1 (125342019-125342325) |
|
307-637, gnl|hg17|chr2 (98694441-98694753) |
|
307-637, gnl|Hg17|chr2 (98694796-98694456) |
|
307-637, gnl|loxAfr1|scaffold_14546 (4916-4612) |
|
307-637, gnl|mm7|chr1 (37681038-37681253) |
|
307-637, gnl|monDom2|scaffold_11 (14468565-14468802) |
|
307-637, gnl|oryCun1|scaffold_201464 (32259-31968) |
|
307-637, gnl|panTro1|chr12 (101404806-101405117) |
|
307-637, gnl|rheMac2|chr13 (98509451-98509765) |
|
307-637, gnl|rn3|chr9 (36385779-36385997) |
|
sin (0.524843) |
|
pla (0.267344) |
|
spc (0.226732) |
|
jej (0.197844) |
|
sag (0.182715) |
|
fty (0.17584) |
|
nje (0.16592) |
|
lin (0.145603) |
|
spl (0.143184) |
|
lyg (0.133103) |
|
kid (0.129735) |
|
ret (0.128733) |
|
bla (0.124347) |
|
ebs (0.118301) |
|
sin (0.524843) |
|
pla (0.267344) |
|
spc (0.226732) |
|
jej (0.197844) |
|
sag (0.182715) |
|
fty (0.17584) |
|
nje (0.16592) |
|
lin (0.145603) |
|
spl (0.143184) |
|
lyg (0.133103) |
|
kid (0.129735) |
|
ret (0.128733) |
|
bla (0.124347) |
|
ebs (0.118301) |
