Ss1.1-rlyg15_g13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATATGAACTGCTCCTTATACAACAGCTTAATTTCCACCTTATTGTCCACAATCCTTATAG ACCTTTTGAGGGCTTTCTCATTGATTTAAAGACTCGATATCCCATGTTGGAGAATCCAGA GATTTTGAGGAAGACAGCTGATGACTTTCTCAGTAGAGTTGCATTGACGGATGCTCACCT TTTATACACACCTTCCCAGATTGCCCTGACTGCCATTTTATCTAGTGCATCCAGAGCAGG AATTACTATGGAAAGTTATTTATCAGAAAGTCTGATGCTCAAAGAGAACAGAACTAGCCT GTCACAGTTACTAGATATTATGAAAAGCATGAGAAACTTGGTAAAAAAATATGAACCACC CAGATCTGAAGAAGTTGCTGTTCTGAAACAGAAGTTGGAGAGATGTCACTCTCCTGAGCT TGCACTTAACGTAATTACCAAGAAGAGGAAAGGTTATGAAGATGATGATTATGTCTCAAA GAAATCCAAACATGAGGAGGAAGATTCTCCAAAGGAAGAATGGACTGATGATGACCTGGT AGATTCCCTGTAACCATCCGAAAGTGACCTGTTAATACTCGCTCATCAACAGGCCACACA TGTGATATATATAAGCTCCCAGGCTACATGTCAAATTGAAGCTTCAGCTCCTGGTCTACA CCACAGCCACTGTGATATAAGCCGCATCCGCAACTTACACCACAGCTCACGGCAAACCAG GATCCCCAACCCACTGAGCGAGGAAAGGGATTGAACCCACATCCTCATGGATACTAGTTG GATTCACTTCCACTGCACAATGGGAACTCCAGAAAGTGGTTTTTAAAATTCCATTATTAA AATGTAAAATCGAAAAATATGAATATACCAACAAAATCATCAATTATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATATGAACTGCTCCTTATACAACAGCTTAATTTCCACCTTATTGTCCACAATCCTTATAG ACCTTTTGAGGGCTTTCTCATTGATTTAAAGACTCGATATCCCATGTTGGAGAATCCAGA GATTTTGAGGAAGACAGCTGATGACTTTCTCAGTAGAGTTGCATTGACGGATGCTCACCT TTTATACACACCTTCCCAGATTGCCCTGACTGCCATTTTATCTAGTGCATCCAGAGCAGG AATTACTATGGAAAGTTATTTATCAGAAAGTCTGATGCTCAAAGAGAACAGAACTAGCCT GTCACAGTTACTAGATATTATGAAAAGCATGAGAAACTTGGTAAAAAAATATGAACCACC CAGATCTGAAGAAGTTGCTGTTCTGAAACAGAAGTTGGAGAGATGTCACTCTCCTGAGCT TGCACTTAACGTAATTACCAAGAAGAGGAAAGGTTATGAAGATGATGATTATGTCTCAAA GAAATCCAAACATGAGGAGGAAGATTCTCCAAAGGAAGAATGGACTGATGATGACCTGGT AGATTCCCTGTAACCATCCGAAAGTGACCTGTTAATACTCGCTCATCAACAGGCCACACA TGTGATATATATAAGCTCCCAGGCTACATGTCAAATTGAAGCTTCAGCTCCTGGTCTACA CCACAGCCACTGTGATATAAGCCGCATCCGCAACTTACACCACAGCTCACGGCAAACCAG GATCCCCAACCCACTGAGCGAGGAAAGGGATTGAACCCACATCCTCATGGATACTAGTTG GATTCACTTCCACTGCACAATGGGAACTCCAGAAAGTGGTTTTTAAAATTCCATTATTAA AATGTAAAATCGAAAAATATGAATATACCAACAAAATCATCAATTATC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 85-260, gnl|bosTau2|chr7 (54202189-54202364) | |
| 85-260, gnl|Hg17|chr5 (86736587-86736412) | |
| 85-260, gnl|Mm7|chr13 (82269912-82270087) | |
| 327-446, gnl|bosTau2|chr7 (54209404-54209524) | |
| 327-446, gnl|canFam2|chr3 (23945935-23945795) | |
| 327-446, gnl|danRer3|chr5 (18894681-18894537) | |
| 327-446, gnl|dasNov1|scaffold_5255 (60887-61038) | |
| 327-446, gnl|echTel1|scaffold_281972 (15649-15765) | |
| 327-446, gnl|fr1|chrUn (116615317-116615462) | |
| 327-446, gnl|galGal2|chrZ (31351408-31351557) | |
| 327-446, gnl|hg17|chr5 (86730952-86731103) | |
| 327-446, gnl|Hg17|chr5 (86731078-86730958) | |
| 327-446, gnl|loxAfr1|scaffold_27028 (2342-2192) | |
| 327-446, gnl|mm7|chr13 (82276492-82276348) | |
| 327-446, gnl|Mm7|chr13 (82276364-82276484) | |
| 327-446, gnl|monDom2|scaffold_20 (13405666-13405518) | |
| 327-446, gnl|oryCun1|scaffold_201565 (4550-4405) | |
| 327-446, gnl|panTro1|chr4 (28516651-28516500) | |
| 327-446, gnl|rheMac2|chr6 (83646078-83646228) | |
| 327-446, gnl|rn3|chr2 (14119649-14119505) | |
| 327-446, gnl|tetNig1|chr12 (2381451-2381340) | |
| 327-446, gnl|xenTro1|scaffold_362 (313142-313280) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 85-260, gnl|bosTau2|chr7 (54202189-54202364) | |
| 85-260, gnl|Hg17|chr5 (86736587-86736412) | |
| 85-260, gnl|Mm7|chr13 (82269912-82270087) | |
| 327-446, gnl|bosTau2|chr7 (54209404-54209524) | |
| 327-446, gnl|canFam2|chr3 (23945935-23945795) | |
| 327-446, gnl|danRer3|chr5 (18894681-18894537) | |
| 327-446, gnl|dasNov1|scaffold_5255 (60887-61038) | |
| 327-446, gnl|echTel1|scaffold_281972 (15649-15765) | |
| 327-446, gnl|fr1|chrUn (116615317-116615462) | |
| 327-446, gnl|galGal2|chrZ (31351408-31351557) | |
| 327-446, gnl|hg17|chr5 (86730952-86731103) | |
| 327-446, gnl|Hg17|chr5 (86731078-86730958) | |
| 327-446, gnl|loxAfr1|scaffold_27028 (2342-2192) | |
| 327-446, gnl|mm7|chr13 (82276492-82276348) | |
| 327-446, gnl|Mm7|chr13 (82276364-82276484) | |
| 327-446, gnl|monDom2|scaffold_20 (13405666-13405518) | |
| 327-446, gnl|oryCun1|scaffold_201565 (4550-4405) | |
| 327-446, gnl|panTro1|chr4 (28516651-28516500) | |
| 327-446, gnl|rheMac2|chr6 (83646078-83646228) | |
| 327-446, gnl|rn3|chr2 (14119649-14119505) | |
| 327-446, gnl|tetNig1|chr12 (2381451-2381340) | |
| 327-446, gnl|xenTro1|scaffold_362 (313142-313280) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| fcc (0.197785) | |
| col (0.195008) | |
| sin (0.174948) | |
| lin (0.145603) | |
| pty (0.142714) | |
| lyg (0.133103) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.197785) | |
| col (0.195008) | |
| sin (0.174948) | |
| lin (0.145603) | |
| pty (0.142714) | |
| lyg (0.133103) |