Non-Coding RNA Search

Ss1.1-rlyg15_l17.5

Sequence:


               
               CCTTATATTTAGTTTTTTTCACCACTCAACCCTGTGAGAGTACATATTGAAATTGGTCCT
GATGGCAGAGTAACTGGTGAAGCAGATGTGGAGTTTGCAACTCATGAAGATGCAGTGGCA
GCTATGTCAAAAGACAAAGCAAATATGCGTGAGTGTGACTTAAGCATCTTGGGGGTCTCT
CTAACAAATAGATCTGTGACTAATGAGAGGAATAGTAAGGGTATTAATATTCCAGTGATA
GAGACAGGATGTTTATAAAAAGTTTGGGTTTTTAAAGTTAGTATGACTAAAAGGAATTTG
TGCTGAGAACACTGACTTAAGGCATATCCGTAATTGATGGAGCAATTTAAATGAATGTTT
AGAAGACTGCTTTTTGAAGAGTTCCCTTTGTGGCTCAGTGGTAATGAACCCGACTTAATA
TCCATGAGGATGCAGGTTCGATCCCTGGTCCTGCTCAGTGGGTTAAGGATCCGTGAGTTG
CAGTGTAGGTCACAGATGCAATTCAGATCGAGTGTGGCTGTGGCCATGGTATAGGCTGGC
AGCTGCGGCTTCAATTTGACCCCTAGCCTGGGAACTTCCATATATTGCAGGTGTGGCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTATATTTAGTTTTTTTCACCACTCAACCCTGTGAGAGTACATATTGAAATTGGTCCT
GATGGCAGAGTAACTGGTGAAGCAGATGTGGAGTTTGCAACTCATGAAGATGCAGTGGCA
GCTATGTCAAAAGACAAAGCAAATATGCGTGAGTGTGACTTAAGCATCTTGGGGGTCTCT
CTAACAAATAGATCTGTGACTAATGAGAGGAATAGTAAGGGTATTAATATTCCAGTGATA
GAGACAGGATGTTTATAAAAAGTTTGGGTTTTTAAAGTTAGTATGACTAAAAGGAATTTG
TGCTGAGAACACTGACTTAAGGCATATCCGTAATTGATGGAGCAATTTAAATGAATGTTT
AGAAGACTGCTTTTTGAAGAGTTCCCTTTGTGGCTCAGTGGTAATGAACCCGACTTAATA
TCCATGAGGATGCAGGTTCGATCCCTGGTCCTGCTCAGTGGGTTAAGGATCCGTGAGTTG
CAGTGTAGGTCACAGATGCAATTCAGATCGAGTGTGGCTGTGGCCATGGTATAGGCTGGC
AGCTGCGGCTTCAATTTGACCCCTAGCCTGGGAACTTCCATATATTGCAGGTGTGGCCTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-378, gnl|bosTau2|chr7 (284738-284351)
               

               
               1-378, gnl|Hg17|chr5 (178977269-178976869)
               

               
               1-378, gnl|Mm7|chr11 (50339923-50340305)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-378, gnl|bosTau2|chr7 (284738-284351)
               

               
               1-378, gnl|Hg17|chr5 (178977269-178976869)
               

               
               1-378, gnl|Mm7|chr11 (50339923-50340305)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               spc (0.113366)

	1-378, gnl\|bosTau2\|chr7 (284738-284351)
	1-378, gnl\|Hg17\|chr5 (178977269-178976869)
	1-378, gnl\|Mm7\|chr11 (50339923-50340305)

	csk (0.140746)
	lyg (0.133103)
	eru (0.120048)
	med (0.116252)
	spc (0.113366)