Non-Coding RNA Search

Ss1.1-rlyg16_c7.5

Sequence:


               
               GTTGTTAGTAGCCTTCTAAATAGTATTAAGCTTTCAATCCTAAATATATCTGTATAAAGT
ATAGCTTCAAAAAAACAACAAAGGCACATTGGGCTTATTATGGAAGTCTTTTTATCAATG
AACATGAACATCTGGCCACTAAATTCTTTAACTGAAATTTGAAGGATTTAGAAAAGGTAA
TTCTTTATTAGGAAATCACAGTTGCATCGATTCATGGTATAGTGGTTCATGGTATGTGTT
GATAATCCTTTTAGTTATGGGTGTAAACTATATAATGTAGTGCTTAGAGGTTTAATCTTC
AGATGATGTAATGTCACCATAAATTGTAGTTTACCAATAGCTCTACAGTGCTAACCTGAT
ATGTTCCTTGTAATTTGTTTTTATCTTCATCTGAGAAGATATTCAAATTTAGATACTTAT
TCGGTTATCCAGTGAAGGCAAGCATATCTAAAGGCATCTGAATCAGCTCTCCCTAGAGGC
ACTAAATCCTAAAAGAGTTTACTCAGAAACTTACCTGATTGTAGAAGATAATGATGTATG
AAGGTTTTACATTTCTTGAATTTTACTTTTTCTACTTGTCCAACAGTGGCCAGTTTATAA
TGTTTATATAGTTATTCACTGTGCCTTAAATTTTTATATTTTTATTTATGCAAACTATAA
AATTTCCCATAAATGCATTAAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGTTAGTAGCCTTCTAAATAGTATTAAGCTTTCAATCCTAAATATATCTGTATAAAGT
ATAGCTTCAAAAAAACAACAAAGGCACATTGGGCTTATTATGGAAGTCTTTTTATCAATG
AACATGAACATCTGGCCACTAAATTCTTTAACTGAAATTTGAAGGATTTAGAAAAGGTAA
TTCTTTATTAGGAAATCACAGTTGCATCGATTCATGGTATAGTGGTTCATGGTATGTGTT
GATAATCCTTTTAGTTATGGGTGTAAACTATATAATGTAGTGCTTAGAGGTTTAATCTTC
AGATGATGTAATGTCACCATAAATTGTAGTTTACCAATAGCTCTACAGTGCTAACCTGAT
ATGTTCCTTGTAATTTGTTTTTATCTTCATCTGAGAAGATATTCAAATTTAGATACTTAT
TCGGTTATCCAGTGAAGGCAAGCATATCTAAAGGCATCTGAATCAGCTCTCCCTAGAGGC
ACTAAATCCTAAAAGAGTTTACTCAGAAACTTACCTGATTGTAGAAGATAATGATGTATG
AAGGTTTTACATTTCTTGAATTTTACTTTTTCTACTTGTCCAACAGTGGCCAGTTTATAA
TGTTTATATAGTTATTCACTGTGCCTTAAATTTTTATATTTTTATTTATGCAAACTATAA
AATTTCCCATAAATGCATTAAATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               117-352, + strand, RNAz p=0.974493

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-352, + strand, RNAz p=0.974493

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of CR749796, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of CR749796, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-684, gnl|bosTau2|chr21 (29832304-29832967)
               

               
               1-684, gnl|Hg17|chr14 (34621668-34622342)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr21 (29832304-29832967)
               

               
               1-684, gnl|Hg17|chr14 (34621668-34622342)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               tra (0.246184)
               

               
               col (0.195008)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.246184)
               

               
               col (0.195008)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

	1-684, gnl\|bosTau2\|chr21 (29832304-29832967)
	1-684, gnl\|Hg17\|chr14 (34621668-34622342)

	tra (0.246184)
	col (0.195008)
	lyg (0.133103)
	kid (0.129735)
	ret (0.128733)