Ss1.1-rlyg16_g21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTGAAAGACTTGGAGTACGGCTGTTTGAAGATCCCACCGAGATGTATGTTTGATCACCC AGACGCAGACAGGACACTCAGTCACCTCATCTCGGGCTTCGAGAACTTCGAAAGGAAGAT CAACTACAGCTTCAAGAATAAGGCTTACCTTCTGCAGGCCTTCACCCACGCCTCCTACCA CTACAACACCATCACCGATTGTTACCAGCGCCTGGAGTTCCTGGGAGATGCCATTCTGGA CTACCTCATAACCAAGCACCTTTACGAAGACCCGCGGCAGCACTCCCCGGGGGTCCTGAC CGACCTGCGCTCTGCTCTGGTCAACAACACCATCTTCGCCTCGCTGGCCGTCAAGTACGA CTACCACAAGTACTTCAAGGCCGTGTCGCCCGAGCTCTTCCACGTCATCGATGATTTTGT GCAGTTTCAGCTTGAGAAGAACGAGATGCAGGGGATGGATTCTGAGCTTAGGAGATCTGA GGAGGATGAAGAGAAAGAAGAGGATATTGAAGTTCCGAAGGCCATGGGGGACATTTTTGA GTCGCTTGCTGGTGCCATTTACATGGATAGTGGAATGTCACTGGAGGTGGTTTGGCAGGT GTACTATCCGATGATGCGGCCGCTAATAGAAAAATTTTCTGCAAACGTGCCCCGTTCGCC TGTGCGAGAATTGCTTGAAATGGAACCAGAAACCGCCAAATTTAGCCCGGCTGAGAGAAC TTACGATGGCAAGGTCAGAGTCACCGTGGAAGTCGTAGGAAAGGGGAAATTCAAAGGTGT TGGCCGAAGTTACAGGATTGCCAAATCTGCAGCAGCACGACGAGCCCTGCGAAGCCTCAA AGCTAATCAACCTCAGGTTCCCAACAGCTGAAACCCCTTTTTAAAATAACGAAAAGAAGC AGAGTTAAGGTGGAAAATATTTAAGTGGAAAAGGATGATTTAAAATTGGCAGTGAGTGGA ATGAATTGAAGGCAGAAGTTAAAGTTTGATAACAAGCTAGATTGCAGAATAAAACATTTA ACATATGTATAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTGAAAGACTTGGAGTACGGCTGTTTGAAGATCCCACCGAGATGTATGTTTGATCACCC AGACGCAGACAGGACACTCAGTCACCTCATCTCGGGCTTCGAGAACTTCGAAAGGAAGAT CAACTACAGCTTCAAGAATAAGGCTTACCTTCTGCAGGCCTTCACCCACGCCTCCTACCA CTACAACACCATCACCGATTGTTACCAGCGCCTGGAGTTCCTGGGAGATGCCATTCTGGA CTACCTCATAACCAAGCACCTTTACGAAGACCCGCGGCAGCACTCCCCGGGGGTCCTGAC CGACCTGCGCTCTGCTCTGGTCAACAACACCATCTTCGCCTCGCTGGCCGTCAAGTACGA CTACCACAAGTACTTCAAGGCCGTGTCGCCCGAGCTCTTCCACGTCATCGATGATTTTGT GCAGTTTCAGCTTGAGAAGAACGAGATGCAGGGGATGGATTCTGAGCTTAGGAGATCTGA GGAGGATGAAGAGAAAGAAGAGGATATTGAAGTTCCGAAGGCCATGGGGGACATTTTTGA GTCGCTTGCTGGTGCCATTTACATGGATAGTGGAATGTCACTGGAGGTGGTTTGGCAGGT GTACTATCCGATGATGCGGCCGCTAATAGAAAAATTTTCTGCAAACGTGCCCCGTTCGCC TGTGCGAGAATTGCTTGAAATGGAACCAGAAACCGCCAAATTTAGCCCGGCTGAGAGAAC TTACGATGGCAAGGTCAGAGTCACCGTGGAAGTCGTAGGAAAGGGGAAATTCAAAGGTGT TGGCCGAAGTTACAGGATTGCCAAATCTGCAGCAGCACGACGAGCCCTGCGAAGCCTCAA AGCTAATCAACCTCAGGTTCCCAACAGCTGAAACCCCTTTTTAAAATAACGAAAAGAAGC AGAGTTAAGGTGGAAAATATTTAAGTGGAAAAGGATGATTTAAAATTGGCAGTGAGTGGA ATGAATTGAAGGCAGAAGTTAAAGTTTGATAACAAGCTAGATTGCAGAATAAAACATTTA ACATATGTATAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-195, gnl|bosTau2|chr21 (40001715-40001909) | |
| 1-195, gnl|canFam2|chr8 (67019249-67019380) | |
| 1-195, gnl|danRer3|chr17 (20911040-20910909) | |
| 1-195, gnl|echTel1|scaffold_323255 (39205-39081) | |
| 1-195, gnl|fr1|chrUn (24862412-24862282) | |
| 1-195, gnl|galGal2|chr5 (42643697-42643828) | |
| 1-195, gnl|hg17|chr14 (94631909-94632040) | |
| 1-195, gnl|Hg17|chr14 (94632111-94631917) | |
| 1-195, gnl|mm7|chr12 (102190590-102190721) | |
| 1-195, gnl|Mm7|chr12 (102190792-102190598) | |
| 1-195, gnl|monDom2|scaffold_6 (73018996-73019127) | |
| 1-195, gnl|oryCun1|scaffold_213205 (101491-101360) | |
| 1-195, gnl|panTro1|chr15 (95070711-95070842) | |
| 1-195, gnl|rheMac2|chr7 (158335352-158335483) | |
| 1-195, gnl|rn3|chr6 (128786359-128786490) | |
| 1-195, gnl|tetNig1|chrUn_random (116382249-116382120) | |
| 1-195, gnl|xenTro1|scaffold_144 (1710965-1710834) | |
| 197-471, gnl|bosTau2|chr21 (40003603-40003877) | |
| 197-471, gnl|canFam2|chr8 (67017031-67017257) | |
| 197-471, gnl|danRer3|chr17 (20912817-20912587) | |
| 197-471, gnl|dasNov1|scaffold_7911 (54535-54309) | |
| 197-471, gnl|echTel1|scaffold_187715 (2356-2577) | |
| 197-471, gnl|fr1|chrUn (24862800-24862577) | |
| 197-471, gnl|galGal2|chr5 (42641614-42641840) | |
| 197-471, gnl|hg17|chr14 (94629966-94630192) | |
| 197-471, gnl|Hg17|chr14 (94630247-94629973) | |
| 197-471, gnl|mm7|chr12 (102188788-102189014) | |
| 197-471, gnl|Mm7|chr12 (102189069-102188795) | |
| 197-471, gnl|monDom2|scaffold_6 (73012988-73013214) | |
| 197-471, gnl|oryCun1|scaffold_213205 (104017-103791) | |
| 197-471, gnl|panTro1|chr15 (95068776-95069002) | |
| 197-471, gnl|rheMac2|chr7 (158333394-158333620) | |
| 197-471, gnl|rn3|chr6 (128784456-128784682) | |
| 197-471, gnl|tetNig1|chrUn_random (116382634-116382416) | |
| 197-471, gnl|xenTro1|scaffold_144 (1711731-1711512) | |
| 704-1035, gnl|bosTau2|chr21 (40007780-40008128) | |
| 704-1035, gnl|Hg17|chr14 (94626755-94626411) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-195, gnl|bosTau2|chr21 (40001715-40001909) | |
| 1-195, gnl|canFam2|chr8 (67019249-67019380) | |
| 1-195, gnl|danRer3|chr17 (20911040-20910909) | |
| 1-195, gnl|echTel1|scaffold_323255 (39205-39081) | |
| 1-195, gnl|fr1|chrUn (24862412-24862282) | |
| 1-195, gnl|galGal2|chr5 (42643697-42643828) | |
| 1-195, gnl|hg17|chr14 (94631909-94632040) | |
| 1-195, gnl|Hg17|chr14 (94632111-94631917) | |
| 1-195, gnl|mm7|chr12 (102190590-102190721) | |
| 1-195, gnl|Mm7|chr12 (102190792-102190598) | |
| 1-195, gnl|monDom2|scaffold_6 (73018996-73019127) | |
| 1-195, gnl|oryCun1|scaffold_213205 (101491-101360) | |
| 1-195, gnl|panTro1|chr15 (95070711-95070842) | |
| 1-195, gnl|rheMac2|chr7 (158335352-158335483) | |
| 1-195, gnl|rn3|chr6 (128786359-128786490) | |
| 1-195, gnl|tetNig1|chrUn_random (116382249-116382120) | |
| 1-195, gnl|xenTro1|scaffold_144 (1710965-1710834) | |
| 197-471, gnl|bosTau2|chr21 (40003603-40003877) | |
| 197-471, gnl|canFam2|chr8 (67017031-67017257) | |
| 197-471, gnl|danRer3|chr17 (20912817-20912587) | |
| 197-471, gnl|dasNov1|scaffold_7911 (54535-54309) | |
| 197-471, gnl|echTel1|scaffold_187715 (2356-2577) | |
| 197-471, gnl|fr1|chrUn (24862800-24862577) | |
| 197-471, gnl|galGal2|chr5 (42641614-42641840) | |
| 197-471, gnl|hg17|chr14 (94629966-94630192) | |
| 197-471, gnl|Hg17|chr14 (94630247-94629973) | |
| 197-471, gnl|mm7|chr12 (102188788-102189014) | |
| 197-471, gnl|Mm7|chr12 (102189069-102188795) | |
| 197-471, gnl|monDom2|scaffold_6 (73012988-73013214) | |
| 197-471, gnl|oryCun1|scaffold_213205 (104017-103791) | |
| 197-471, gnl|panTro1|chr15 (95068776-95069002) | |
| 197-471, gnl|rheMac2|chr7 (158333394-158333620) | |
| 197-471, gnl|rn3|chr6 (128784456-128784682) | |
| 197-471, gnl|tetNig1|chrUn_random (116382634-116382416) | |
| 197-471, gnl|xenTro1|scaffold_144 (1711731-1711512) | |
| 704-1035, gnl|bosTau2|chr21 (40007780-40008128) | |
| 704-1035, gnl|Hg17|chr14 (94626755-94626411) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| pla (0.401016) | |
| sto (0.179824) | |
| cut (0.169924) | |
| cki (0.165235) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| tra (0.123092) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.401016) | |
| sto (0.179824) | |
| cut (0.169924) | |
| cki (0.165235) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| tra (0.123092) |