Ss1.1-rlyg16_i23.5
|
TTTTTTTTTTTTTTTTTTTTTAAGTATATTTTTTAAATTAAAAACCCCAAATGTTTATTG
CAATGGTTAATTGTAGCATCTCAGCATCTGGGTGGAAGCTGCATCTTTTTCTTCCCCGTA
TAACCAGGGACCATCTGTGAAATTCAATTTCCAACCAGACAGTTTTGAGCAGAATGAACA
TAAATGTTCACTGGAAATTTATTAACCGGTTAAATATGCATTCACCTGCAGTGTAAAAAC
CATGTTTAATTATAATATTCAGTGGGCAAATTGTTAAACTCAGTATCTGTAGAGCTAGAA
TAAAAGCAACTCTTTGCTAGCTACTCAGCCCTTTTGGCCAAATTGTCTTAAAGGGTCTTA
AGGGTTTGTTAAGAAAGAACTCTTACTCTGTTTCTCTGCAGTGCTTTGAAATAGCTTTTG
GGTGCAAGTTTTCCTCAGCATCCTTTTGCACTCAGCTTTTTTTACAGGTAGGTGGTACTT
AAGAAAAGTTAAGAGGACTAAAGTCTAAGTCCTTTTAGTTTTCCACCACCTGAAGGTAGG
TGAGACTGTCCCCTTTGTAGTAATTCAAGCTGTTTTGCTGAGACTTGCTATAGCAGATGG
GCCTAGAAAGAATTTTCTGCTTTTGTATTTGCTGTAACAGGGCAGGGAGAACAGATAGTC
CCAGAAACCTCTTTATGTATCCAGTGTGGTATTATTACTTTTTAATGCTATTATTGGTGG
TGTTCATTCACAGTGTAGTTAAAGGGGGAAGGCTCCATTGCATTCTTTGGCTAAGGCCTG
AGAGTGCTTGATGGTTTGTAAGTTCTAAATACTTGAGGTTTTTGTTTTTGTTTTCCTTTT
AAAATTCTTCAGGGAGAGAGAGGGGATTGTTTCTGAGGGGTACTGAAAGTGTGGTTGAAT
GTGCAACATACAGGTAGGTTGTCAGCATAAGCTGAAATATATGCATGTAAGAACTTTTAC
TCTCCCCCACCCCCACTGTCTTCTTTCTTAACTTCTGGTTTTTTCCCTCTTAATAGAAGT
TGAGGCTGAGGGAGGATGGTAGGCACAGGGAAAACATGGCAGCACTACTCTGTGCTTTCA
AACCAAAGTGTCTACCCCCCCAAAAAAAAATTTTTTTTTTTTTTCCCCATCTAAGCACTG
ATTAGTCCATTGTGGATATTTCACCCTAAAATGTTTTTTTTTAAGGTGCCACCGCAGGGG
GTATCCTACTCTTGCAGGTCTTGAAAAGATGTCTGCAGTAAAAGGTCTTTGGGCAAGCAG
TATTTGGTCTGCTGCTTGCTTCCCTTTTTTCCACCAGGGATGTTGTAATCATAAAGATAA
CGGCTTATTTCAGAACTGAAAAGCTATTGTGATCTGAGCACAGCAGAAATCTACTAGTAG
AGTTTTTCCTATATAATACCGCCAGAATTAAGTCTTCTGCCTCTGTCTGCCACTCATAAT
TCAGGTTCTGCCTTTGCTTCAGAACATGAGCAGAAAAGTCCTTATTTGATGCTAATTATT
GCAGTCATGATTGAAGTTCATTTAGGGAAAGGATTTCCAAGCTGTGGGGCTGCTTCTCCC
CAGTACCTCCCTAACAATTCATGGTGTGGAGTTCTCTCATCTAAAAGGTTGGTGGCTTTT
GCTTGGGATCAGTGCTCTCTCTATTTATGTCCTTGCTGAACACATTCCTGTTGCGTTAAG
ACTTGAAAGATTTGTAGATGTGTGATGTTCAGGCACAGGATGCTAAGAGCTTATGTTACT
ATTCTTAGTTTGTAAAATTGTCCTTTTGATACCATCTTGTTTTCTTTTGTAGGTATAAAT
AAAACACTGTTGACAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTTTTTTTTTTTTTTTTTTTAAGTATATTTTTTAAATTAAAAACCCCAAATGTTTATTG
CAATGGTTAATTGTAGCATCTCAGCATCTGGGTGGAAGCTGCATCTTTTTCTTCCCCGTA
TAACCAGGGACCATCTGTGAAATTCAATTTCCAACCAGACAGTTTTGAGCAGAATGAACA
TAAATGTTCACTGGAAATTTATTAACCGGTTAAATATGCATTCACCTGCAGTGTAAAAAC
CATGTTTAATTATAATATTCAGTGGGCAAATTGTTAAACTCAGTATCTGTAGAGCTAGAA
TAAAAGCAACTCTTTGCTAGCTACTCAGCCCTTTTGGCCAAATTGTCTTAAAGGGTCTTA
AGGGTTTGTTAAGAAAGAACTCTTACTCTGTTTCTCTGCAGTGCTTTGAAATAGCTTTTG
GGTGCAAGTTTTCCTCAGCATCCTTTTGCACTCAGCTTTTTTTACAGGTAGGTGGTACTT
AAGAAAAGTTAAGAGGACTAAAGTCTAAGTCCTTTTAGTTTTCCACCACCTGAAGGTAGG
TGAGACTGTCCCCTTTGTAGTAATTCAAGCTGTTTTGCTGAGACTTGCTATAGCAGATGG
GCCTAGAAAGAATTTTCTGCTTTTGTATTTGCTGTAACAGGGCAGGGAGAACAGATAGTC
CCAGAAACCTCTTTATGTATCCAGTGTGGTATTATTACTTTTTAATGCTATTATTGGTGG
TGTTCATTCACAGTGTAGTTAAAGGGGGAAGGCTCCATTGCATTCTTTGGCTAAGGCCTG
AGAGTGCTTGATGGTTTGTAAGTTCTAAATACTTGAGGTTTTTGTTTTTGTTTTCCTTTT
AAAATTCTTCAGGGAGAGAGAGGGGATTGTTTCTGAGGGGTACTGAAAGTGTGGTTGAAT
GTGCAACATACAGGTAGGTTGTCAGCATAAGCTGAAATATATGCATGTAAGAACTTTTAC
TCTCCCCCACCCCCACTGTCTTCTTTCTTAACTTCTGGTTTTTTCCCTCTTAATAGAAGT
TGAGGCTGAGGGAGGATGGTAGGCACAGGGAAAACATGGCAGCACTACTCTGTGCTTTCA
AACCAAAGTGTCTACCCCCCCAAAAAAAAATTTTTTTTTTTTTTCCCCATCTAAGCACTG
ATTAGTCCATTGTGGATATTTCACCCTAAAATGTTTTTTTTTAAGGTGCCACCGCAGGGG
GTATCCTACTCTTGCAGGTCTTGAAAAGATGTCTGCAGTAAAAGGTCTTTGGGCAAGCAG
TATTTGGTCTGCTGCTTGCTTCCCTTTTTTCCACCAGGGATGTTGTAATCATAAAGATAA
CGGCTTATTTCAGAACTGAAAAGCTATTGTGATCTGAGCACAGCAGAAATCTACTAGTAG
AGTTTTTCCTATATAATACCGCCAGAATTAAGTCTTCTGCCTCTGTCTGCCACTCATAAT
TCAGGTTCTGCCTTTGCTTCAGAACATGAGCAGAAAAGTCCTTATTTGATGCTAATTATT
GCAGTCATGATTGAAGTTCATTTAGGGAAAGGATTTCCAAGCTGTGGGGCTGCTTCTCCC
CAGTACCTCCCTAACAATTCATGGTGTGGAGTTCTCTCATCTAAAAGGTTGGTGGCTTTT
GCTTGGGATCAGTGCTCTCTCTATTTATGTCCTTGCTGAACACATTCCTGTTGCGTTAAG
ACTTGAAAGATTTGTAGATGTGTGATGTTCAGGCACAGGATGCTAAGAGCTTATGTTACT
ATTCTTAGTTTGTAAAATTGTCCTTTTGATACCATCTTGTTTTCTTTTGTAGGTATAAAT
AAAACACTGTTGACAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
841-1089, LeukoS5_4_D06.g1_A027 Stimulated peripheral blood leukocytes S5
(gb|CD471130.1|), blast E-value=6e-16, identity=90.67% |
|
674-817, UMC-pd10en2-003-d01 Endometrium gilt D10 of estrous cycle pd10en
(gb|CO986279.1|), blast E-value=0, identity=99.31% |
|
841-817, UMC-pd0fol-004-c01 D0 ovarian follicle gilt standing estrus pd0fol
(gb|CO993627.1|), blast E-value=0, identity=100% |
|
841-811, LB01739.CR_G16 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|EE335880.1|),
blast E-value=2e-18, identity=91.14% |
|
841-811, LB029111.CR_O21 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE369865.1|),
blast E-value=2e-18, identity=91.14% |
|
841-811, LB03092.CR_F07 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE389175.1|),
blast E-value=2e-18, identity=91.14% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
841-1089, LeukoS5_4_D06.g1_A027 Stimulated peripheral blood leukocytes S5
(gb|CD471130.1|), blast E-value=6e-16, identity=90.67% |
|
674-817, UMC-pd10en2-003-d01 Endometrium gilt D10 of estrous cycle pd10en
(gb|CO986279.1|), blast E-value=0, identity=99.31% |
|
841-817, UMC-pd0fol-004-c01 D0 ovarian follicle gilt standing estrus pd0fol
(gb|CO993627.1|), blast E-value=0, identity=100% |
|
841-811, LB01739.CR_G16 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|EE335880.1|),
blast E-value=2e-18, identity=91.14% |
|
841-811, LB029111.CR_O21 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE369865.1|),
blast E-value=2e-18, identity=91.14% |
|
841-811, LB03092.CR_F07 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE389175.1|),
blast E-value=2e-18, identity=91.14% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
cbr (2.81546) |
|
thg (2.40903) |
|
cbe (1.91388) |
|
sin (1.74948) |
|
sag (1.64444) |
|
eye (1.53453) |
|
bla (1.49217) |
|
gul (1.42071) |
|
csk (1.40746) |
|
spc (1.36039) |
|
lyg (1.33103) |
|
lin (1.31043) |
|
ret (1.1586) |
|
lnt (1.13847) |
|
fcc (0.988924) |
|
tra (0.984737) |
|
aor (0.976372) |
|
cte (0.87822) |
|
ecc (0.805246) |
|
cty (0.72856) |
|
pgl (0.7109) |
|
med (0.697512) |
|
rec (0.692281) |
|
fhi (0.678311) |
|
isp (0.601504) |
|
eru (0.60024) |
|
ebs (0.591506) |
|
pty (0.570858) |
|
cmu (0.55918) |
|
hlv (0.557025) |
|
fce (0.543183) |
|
ova (0.516529) |
|
pro (0.512033) |
|
cbl (0.45919) |
|
ece (0.45861) |
|
fat (0.442282) |
|
ski (0.440205) |
|
liv (0.438853) |
|
spl (0.429553) |
|
amn (0.417711) |
|
tes (0.415628) |
|
hea (0.408998) |
|
jej (0.395687) |
|
col (0.390016) |
|
kid (0.389206) |
|
elu (0.385356) |
|
sug (0.381874) |
|
fty (0.351679) |
|
ill (0.351185) |
|
csp (0.322373) |
|
mga (0.32041) |
|
tbr (0.308356) |
|
lun (0.300978) |
|
hyp (0.285673) |
|
che (0.272628) |
|
ste (0.270416) |
|
eep (0.245128) |
|
pan (0.23596) |
|
mgp (0.230681) |
|
nms (0.213858) |
|
nbm (0.198649) |
|
eje (0.197668) |
|
ldo (0.194005) |
|
nep (0.183925) |
|
sto (0.179824) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
fco (0.157208) |
|
cli (0.152812) |
|
bfe (0.149858) |
|
nca (0.136874) |
|
nmm (0.132802) |
|
ese (0.126502) |
|
clu (0.119646) |
|
jca (0.11396) |
|
cbr (2.81546) |
|
thg (2.40903) |
|
cbe (1.91388) |
|
sin (1.74948) |
|
sag (1.64444) |
|
eye (1.53453) |
|
bla (1.49217) |
|
gul (1.42071) |
|
csk (1.40746) |
|
spc (1.36039) |
|
lyg (1.33103) |
|
lin (1.31043) |
|
ret (1.1586) |
|
lnt (1.13847) |
|
fcc (0.988924) |
|
tra (0.984737) |
|
aor (0.976372) |
|
cte (0.87822) |
|
ecc (0.805246) |
|
cty (0.72856) |
|
pgl (0.7109) |
|
med (0.697512) |
|
rec (0.692281) |
|
fhi (0.678311) |
|
isp (0.601504) |
|
eru (0.60024) |
|
ebs (0.591506) |
|
pty (0.570858) |
|
cmu (0.55918) |
|
hlv (0.557025) |
|
fce (0.543183) |
|
ova (0.516529) |
|
pro (0.512033) |
|
cbl (0.45919) |
|
ece (0.45861) |
|
fat (0.442282) |
|
ski (0.440205) |
|
liv (0.438853) |
|
spl (0.429553) |
|
amn (0.417711) |
|
tes (0.415628) |
|
hea (0.408998) |
|
jej (0.395687) |
|
col (0.390016) |
|
kid (0.389206) |
|
elu (0.385356) |
|
sug (0.381874) |
|
fty (0.351679) |
|
ill (0.351185) |
|
csp (0.322373) |
|
mga (0.32041) |
|
tbr (0.308356) |
|
lun (0.300978) |
|
hyp (0.285673) |
|
che (0.272628) |
|
ste (0.270416) |
|
eep (0.245128) |
|
pan (0.23596) |
|
mgp (0.230681) |
|
nms (0.213858) |
|
nbm (0.198649) |
|
eje (0.197668) |
|
ldo (0.194005) |
|
nep (0.183925) |
|
sto (0.179824) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
fco (0.157208) |
|
cli (0.152812) |
|
bfe (0.149858) |
|
nca (0.136874) |
|
nmm (0.132802) |
|
ese (0.126502) |
|
clu (0.119646) |
|
jca (0.11396) |