Non-Coding RNA Search

Ss1.1-rlyg16_m20.5

Sequence:


               
               TTTTTTTTTTTTTTTCCTATAGTACTTTTAAAACTTTTCAGATGAGCTGGAAAACACCTT
AGTACATTGGAGTTGGCGTTGTATTGATTACAGTCCCAACTCTAAAGCCTTATACTCATG
TCTTAAGTATTACTGATTATCCTGTGAATTGTTGGTTTGGTATTTGACATTGTAGTTATC
CACCTTGCACTTCAGCCTTTGCGAAAAGGATATTACCAGGTATGTTCTTATTTCTGGTTG
ACGACTGAATTTGTAATTTCACGGTTTCATTCTTCCTCCCTGTAATCCAAAAAGGAAATC
CACGTAGGACTCTAAATTTCTCACTTCACCATTGGAATCAATACAGATTTAGCAACATTG
TACATAAATGGCATCCAAGCATTTTTCCACCTGTTTACCAAGTTTACCAGCCCTATTTTA
TGTGTTAGATTCGTGGGTTTTCTCACTGTTTTTCTGAGGTAAATGACTTGTTAGAGAGCC
TCAGTAAGAAATTTTCACCAAAATCACAAAAACGTAAAGAAATCACCAGAGACAGATTTT
TAATTTTTTTGAAATCTTATATGGTATTTCCTTTTGATATCACTTAACTCATTTTAATTT
TATGACTGCCAACTTGTTATGGTATTAATTATATGTATATGTTTATATTTATATGTATGC
ATATAATATATGTATATGAAGAATAAAGTTAAGATTTGGTCAAACTATAACTATATTTTC
CCATTCAAGTACAAAAATGTTTTCAAGGCTGCAAAAAGTGTACAGTTGTTAAACAAGTTG
TAAATAAAGACTTGTATAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTCCTATAGTACTTTTAAAACTTTTCAGATGAGCTGGAAAACACCTT
AGTACATTGGAGTTGGCGTTGTATTGATTACAGTCCCAACTCTAAAGCCTTATACTCATG
TCTTAAGTATTACTGATTATCCTGTGAATTGTTGGTTTGGTATTTGACATTGTAGTTATC
CACCTTGCACTTCAGCCTTTGCGAAAAGGATATTACCAGGTATGTTCTTATTTCTGGTTG
ACGACTGAATTTGTAATTTCACGGTTTCATTCTTCCTCCCTGTAATCCAAAAAGGAAATC
CACGTAGGACTCTAAATTTCTCACTTCACCATTGGAATCAATACAGATTTAGCAACATTG
TACATAAATGGCATCCAAGCATTTTTCCACCTGTTTACCAAGTTTACCAGCCCTATTTTA
TGTGTTAGATTCGTGGGTTTTCTCACTGTTTTTCTGAGGTAAATGACTTGTTAGAGAGCC
TCAGTAAGAAATTTTCACCAAAATCACAAAAACGTAAAGAAATCACCAGAGACAGATTTT
TAATTTTTTTGAAATCTTATATGGTATTTCCTTTTGATATCACTTAACTCATTTTAATTT
TATGACTGCCAACTTGTTATGGTATTAATTATATGTATATGTTTATATTTATATGTATGC
ATATAATATATGTATATGAAGAATAAAGTTAAGATTTGGTCAAACTATAACTATATTTTC
CCATTCAAGTACAAAAATGTTTTCAAGGCTGCAAAAAGTGTACAGTTGTTAAACAAGTTG
TAAATAAAGACTTGTATAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               4-159, + strand, RNAz p=0.842795

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-159, + strand, RNAz p=0.842795

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               4-802, gnl|bosTau2|chr27 (24145237-24146025)
               

               
               4-802, gnl|Hg17|chr8 (43004043-43004835)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-802, gnl|bosTau2|chr27 (24145237-24146025)
               

               
               4-802, gnl|Hg17|chr8 (43004043-43004835)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               fco (0.628832)
               

               
               ret (0.514933)
               

               
               lin (0.436808)
               

               
               amn (0.417711)
               

               
               lyg (0.399308)
               

               
               mga (0.32041)
               

               
               csk (0.281492)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               bfe (0.149858)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.628832)
               

               
               ret (0.514933)
               

               
               lin (0.436808)
               

               
               amn (0.417711)
               

               
               lyg (0.399308)
               

               
               mga (0.32041)
               

               
               csk (0.281492)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               bfe (0.149858)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)

	4-802, gnl\|bosTau2\|chr27 (24145237-24146025)
	4-802, gnl\|Hg17\|chr8 (43004043-43004835)

	fco (0.628832)
	ret (0.514933)
	lin (0.436808)
	amn (0.417711)
	lyg (0.399308)
	mga (0.32041)
	csk (0.281492)
	tra (0.246184)
	hea (0.204499)
	fli (0.202881)
	aor (0.195274)
	col (0.195008)
	sag (0.182715)
	mgm (0.180343)
	gul (0.177588)
	sin (0.174948)
	bfe (0.149858)
	ssp (0.13552)
	ova (0.129132)