Ss1.1-rlyg18_h2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGACTGAAACAGTTAAGCAGACTCAAACATCTGAAGTTTATGAGGGAGGCGGTTCCAAA AATGTGAGATCTGATGTTTCTGATCAAGAGGAAGATGAAGAAAGCGAAGACTGTCCAGTG TCTATTAATTTGTCCAAAGCTGAAACTCAGGCTTTGACTAATTATGGAAGTGGAGAGGAT GAAAATGAAGATGAAGAAATAGAAGAATTTGAAGAGGGCCCTGTAGATGTCCAGACTTCA CTTCAGGCTAACACTGAGACTGCGGAAGAAAATGAACATGATGATCAGGTTCCACAACAT GACTTTGAAAAATCAGCAGAAAGCAAAATTGTCCCATCAGAACAAGAACCCACTATGAGT GATGACCAAGATAGCACTCCTGTGAAGCCCTGTTACCTCAATATCTTGGAAAATGAGCAA CCTTTAAATAGTGCTGTCCAGAAGGACTCACTCACTACTATCGATTCATCCAATCAACCT AACCCTTTGCCTTTACCTTTAACTGAAATTGAAACCTTGGTGCCTAGAGTCAAAGAAGTT AAATCTGCTCAGGAAACTCCTGAAAGCTCTTTGGCTGGAAGCCCTGATACTGAATCTCCA GTGTTAGTGAATGACTATGAAGCAGAATCTGGTAACATAAGTCAAAAATCTGATGAGGAA GACTTTGTGAAAGTTGAAGATTTACCACTTAAACTGACAATATATTCAGAGGCAGACCTG AGGAAGAAAATGGTAGAAGAAGAACAGAAAAATCATTTATCTGGTGAAATATTATGTGAA ATGCAGACTGAAGAATTAGCTGGGAATTCTCAGACATTAAAAGAACCTGAAACAGTGGGA GCCCAAAGTACATGAGGTGTCTTCAGAGACTCATCTCTGTTTCCATAGTAAACTCATATA TGAAAGTGGCACTAAATAAACATCTGTTTTGATCTATATAAAATGTAAATTAGTTTGACA CTGCATTTTTAGGAGGTATGCTAATTTCAGCCCATGGCAGTTTAAAACATCAGAAATGGA ATTCTGGAAAGATTCAAGCCTTGATACACTGTGGGGTTTTTTTCTTTTTCTTTCATTTTT TTTGGTCTTGATTTTCTCCCCATTGTGATGTTTGGTAACATTAAATTTAAAATGTAGTTT TAAATAAAGTTTGGTCTTATCTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGACTGAAACAGTTAAGCAGACTCAAACATCTGAAGTTTATGAGGGAGGCGGTTCCAAA AATGTGAGATCTGATGTTTCTGATCAAGAGGAAGATGAAGAAAGCGAAGACTGTCCAGTG TCTATTAATTTGTCCAAAGCTGAAACTCAGGCTTTGACTAATTATGGAAGTGGAGAGGAT GAAAATGAAGATGAAGAAATAGAAGAATTTGAAGAGGGCCCTGTAGATGTCCAGACTTCA CTTCAGGCTAACACTGAGACTGCGGAAGAAAATGAACATGATGATCAGGTTCCACAACAT GACTTTGAAAAATCAGCAGAAAGCAAAATTGTCCCATCAGAACAAGAACCCACTATGAGT GATGACCAAGATAGCACTCCTGTGAAGCCCTGTTACCTCAATATCTTGGAAAATGAGCAA CCTTTAAATAGTGCTGTCCAGAAGGACTCACTCACTACTATCGATTCATCCAATCAACCT AACCCTTTGCCTTTACCTTTAACTGAAATTGAAACCTTGGTGCCTAGAGTCAAAGAAGTT AAATCTGCTCAGGAAACTCCTGAAAGCTCTTTGGCTGGAAGCCCTGATACTGAATCTCCA GTGTTAGTGAATGACTATGAAGCAGAATCTGGTAACATAAGTCAAAAATCTGATGAGGAA GACTTTGTGAAAGTTGAAGATTTACCACTTAAACTGACAATATATTCAGAGGCAGACCTG AGGAAGAAAATGGTAGAAGAAGAACAGAAAAATCATTTATCTGGTGAAATATTATGTGAA ATGCAGACTGAAGAATTAGCTGGGAATTCTCAGACATTAAAAGAACCTGAAACAGTGGGA GCCCAAAGTACATGAGGTGTCTTCAGAGACTCATCTCTGTTTCCATAGTAAACTCATATA TGAAAGTGGCACTAAATAAACATCTGTTTTGATCTATATAAAATGTAAATTAGTTTGACA CTGCATTTTTAGGAGGTATGCTAATTTCAGCCCATGGCAGTTTAAAACATCAGAAATGGA ATTCTGGAAAGATTCAAGCCTTGATACACTGTGGGGTTTTTTTCTTTTTCTTTCATTTTT TTTGGTCTTGATTTTCTCCCCATTGTGATGTTTGGTAACATTAAATTTAAAATGTAGTTT TAAATAAAGTTTGGTCTTATCTGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 129-290, gnl|bosTau2|chr27 (12294170-12294009) | |
| 129-290, gnl|canFam2|chr16 (44245447-44245650) | |
| 129-290, gnl|danRer3|chr1 (12432106-12431909) | |
| 129-290, gnl|dasNov1|scaffold_105750 (1005-1168) | |
| 129-290, gnl|echTel1|scaffold_324006 (114826-115031) | |
| 129-290, gnl|fr1|chrUn (18964080-18964235) | |
| 129-290, gnl|galGal2|chr4 (63307283-63307112) | |
| 129-290, gnl|hg17|chr8 (17913420-17913628) | |
| 129-290, gnl|Hg17|chr8 (17913457-17913618) | |
| 129-290, gnl|loxAfr1|scaffold_2329 (50921-51127) | |
| 129-290, gnl|mm7|chr8 (40111219-40111425) | |
| 129-290, gnl|Mm7|chr8 (40111255-40111416) | |
| 129-290, gnl|monDom2|scaffold_32 (12815986-12815802) | |
| 129-290, gnl|oryCun1|scaffold_179860 (4574-4782) | |
| 129-290, gnl|panTro1|chr7 (18706533-18706749) | |
| 129-290, gnl|rheMac2|chr8 (17904190-17904393) | |
| 129-290, gnl|rn3|chr16 (54327194-54326988) | |
| 129-290, gnl|tetNig1|chr18 (7693546-7693680) | |
| 129-290, gnl|xenTro1|scaffold_1260 (52666-52858) | |
| 355-622, gnl|bosTau2|chr27 (12291095-12290828) | |
| 355-622, gnl|canFam2|chr16 (44248681-44248888) | |
| 355-622, gnl|dasNov1|scaffold_155217 (3704-3497) | |
| 355-622, gnl|echTel1|scaffold_324006 (118289-118496) | |
| 355-622, gnl|galGal2|chr4 (63306159-63305957) | |
| 355-622, gnl|hg17|chr8 (17916342-17916549) | |
| 355-622, gnl|Hg17|chr8 (17916366-17916633) | |
| 355-622, gnl|loxAfr1|scaffold_2329 (54353-54558) | |
| 355-622, gnl|mm7|chr8 (40114165-40114372) | |
| 355-622, gnl|Mm7|chr8 (40114189-40114456) | |
| 355-622, gnl|monDom2|scaffold_32 (12813694-12813497) | |
| 355-622, gnl|oryCun1|scaffold_123915 (1853-2060) | |
| 355-622, gnl|panTro1|chr7 (18709447-18709654) | |
| 355-622, gnl|rheMac2|chr8 (17907352-17907559) | |
| 355-622, gnl|rn3|chr16 (54324373-54324163) | |
| 829-1164, gnl|bosTau2|chr27 (12287641-12287300) | |
| 829-1164, gnl|Hg17|chr8 (17929425-17929758) | |
| 829-1164, gnl|Mm7|chr8 (40117409-40117768) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 129-290, gnl|bosTau2|chr27 (12294170-12294009) | |
| 129-290, gnl|canFam2|chr16 (44245447-44245650) | |
| 129-290, gnl|danRer3|chr1 (12432106-12431909) | |
| 129-290, gnl|dasNov1|scaffold_105750 (1005-1168) | |
| 129-290, gnl|echTel1|scaffold_324006 (114826-115031) | |
| 129-290, gnl|fr1|chrUn (18964080-18964235) | |
| 129-290, gnl|galGal2|chr4 (63307283-63307112) | |
| 129-290, gnl|hg17|chr8 (17913420-17913628) | |
| 129-290, gnl|Hg17|chr8 (17913457-17913618) | |
| 129-290, gnl|loxAfr1|scaffold_2329 (50921-51127) | |
| 129-290, gnl|mm7|chr8 (40111219-40111425) | |
| 129-290, gnl|Mm7|chr8 (40111255-40111416) | |
| 129-290, gnl|monDom2|scaffold_32 (12815986-12815802) | |
| 129-290, gnl|oryCun1|scaffold_179860 (4574-4782) | |
| 129-290, gnl|panTro1|chr7 (18706533-18706749) | |
| 129-290, gnl|rheMac2|chr8 (17904190-17904393) | |
| 129-290, gnl|rn3|chr16 (54327194-54326988) | |
| 129-290, gnl|tetNig1|chr18 (7693546-7693680) | |
| 129-290, gnl|xenTro1|scaffold_1260 (52666-52858) | |
| 355-622, gnl|bosTau2|chr27 (12291095-12290828) | |
| 355-622, gnl|canFam2|chr16 (44248681-44248888) | |
| 355-622, gnl|dasNov1|scaffold_155217 (3704-3497) | |
| 355-622, gnl|echTel1|scaffold_324006 (118289-118496) | |
| 355-622, gnl|galGal2|chr4 (63306159-63305957) | |
| 355-622, gnl|hg17|chr8 (17916342-17916549) | |
| 355-622, gnl|Hg17|chr8 (17916366-17916633) | |
| 355-622, gnl|loxAfr1|scaffold_2329 (54353-54558) | |
| 355-622, gnl|mm7|chr8 (40114165-40114372) | |
| 355-622, gnl|Mm7|chr8 (40114189-40114456) | |
| 355-622, gnl|monDom2|scaffold_32 (12813694-12813497) | |
| 355-622, gnl|oryCun1|scaffold_123915 (1853-2060) | |
| 355-622, gnl|panTro1|chr7 (18709447-18709654) | |
| 355-622, gnl|rheMac2|chr8 (17907352-17907559) | |
| 355-622, gnl|rn3|chr16 (54324373-54324163) | |
| 829-1164, gnl|bosTau2|chr27 (12287641-12287300) | |
| 829-1164, gnl|Hg17|chr8 (17929425-17929758) | |
| 829-1164, gnl|Mm7|chr8 (40117409-40117768) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| mgp (0.692042) | |
| isp (0.451128) | |
| ret (0.3862) | |
| tra (0.369276) | |
| sme (0.305437) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| thg (0.253582) | |
| ece (0.229305) | |
| tes (0.207814) | |
| aor (0.195274) | |
| fco (0.157208) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| pty (0.142714) | |
| kid (0.129735) | |
| pgl (0.118483) | |
| spc (0.113366) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (0.692042) | |
| isp (0.451128) | |
| ret (0.3862) | |
| tra (0.369276) | |
| sme (0.305437) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| thg (0.253582) | |
| ece (0.229305) | |
| tes (0.207814) | |
| aor (0.195274) | |
| fco (0.157208) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| pty (0.142714) | |
| kid (0.129735) | |
| pgl (0.118483) | |
| spc (0.113366) |