Non-Coding RNA Search

Ss1.1-rlyg18_p23.5

Sequence:


               
               AACTCGGGTCGGCAGCGGGAGCCTAGAGAAGGCAACGTGGAGCCCAGAGCCGAGGCGCCC
TTAGATCGCGCTCTCTGTCCCCAGCAAAGGGGACAACTCTGGCCCAAGTCCTGGCCTAGA
GGGAGCGCTGTGGATACGCGCTGCCTTCTGCCTGGAAGTGTTGGGCAGGTGGTGGGAGTT
CCTGAATGTCAGGGTTTTAAAACACGTGTTTGTCTCTGTCATTTTTACGCAGCGGGGTTT
TGGCCAAATTGGGCGAGGGCACAAAATAACCACTTACCCCTTCTCACCGAGGAAGAACGG
GAGAAAGGGTATGGCACAGTCTCAAGGCTGGGTGAAAAGATACTTCAAGGCCTTTTGTAA
AGGCTTCTTTGTGGCGGTGCCCGTGGCAGTAACTTTCCTGGATCAGGTTGCCTGCGTGGC
AAGAGTGGAAGGAGCATCAATGCAGCCTTCTTTGAATCCCGGGGGGAGCCAATCGTCTGA
TGTGGTGCTTTTGAACCACTGGAAAGTGAGGAATTTTGAAGTACAACGTGGTGACATTGT
GTCATTAGTGTCCCCGAAGAACCCGGAACAGAAGATCATTAAAAGAGTGATTGCTCTTGA
AGGAGATATTGTAAAAACCATGGGACACAAAAACCGCTATGTCAAAGTCCCTCGGGGTCA
CATCTGGGTCGAAGGTGATCATCACGGACACAGTTTTGACAGTAACTCCTTTGGGCCGGT
TTCCTTGGGGCTCTTGCATGCCCATGCTACACATATCCTGTGGCCTCCAGAGCGCTGGCA
GAAATTGGAATCTGTTCTTCCTCCAGAGCGCTTGCCCGTTCAGACTGAAGAGGAGTGCCT
GCATGGATCTCCCTGAGCTGCTGCTGTGGAGAGGCCACCACCACCACCACCAATCACAGG
AAGAGGGATAGATAAGAGACACACTCCAAAAGGCAAAGCTTCCCACAATATGATGCTGTG
CAAGATACATTTCTATCACATTAGGATGACCTGTATTACTAGAGAAAGAGTTGGAAAAGA
TTAAATGGCACCAGATTTTGTTAAATTGTAATACCATTTTGTTTAATGCCAAAAAATGCA
GACATTTGGGAATATGAATATTTTATTCCTATATGTTTTTAAAGAGGATAAATTTTGGGT
TTTGTTTTATGCATACATATTCTGTTGATTGATAGGTTTCAATTTTGCTGCTGGCTGCTG
GATAGAAATGAAAACTAATATTTGATGAAAGTAAATGACATCAGTCAATTACTCTTAAGA
TGGAACTTAAAGAAACATATTATGCGCATAGTGATGGGAATTACACTGTAATTGACAGTA
TGTACAACGCAGTGACTGCCAGTTAGGAAGAACAGTAAACTGTGATGTAAAAATAAAACA
CTGATTTGCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTCGGGTCGGCAGCGGGAGCCTAGAGAAGGCAACGTGGAGCCCAGAGCCGAGGCGCCC
TTAGATCGCGCTCTCTGTCCCCAGCAAAGGGGACAACTCTGGCCCAAGTCCTGGCCTAGA
GGGAGCGCTGTGGATACGCGCTGCCTTCTGCCTGGAAGTGTTGGGCAGGTGGTGGGAGTT
CCTGAATGTCAGGGTTTTAAAACACGTGTTTGTCTCTGTCATTTTTACGCAGCGGGGTTT
TGGCCAAATTGGGCGAGGGCACAAAATAACCACTTACCCCTTCTCACCGAGGAAGAACGG
GAGAAAGGGTATGGCACAGTCTCAAGGCTGGGTGAAAAGATACTTCAAGGCCTTTTGTAA
AGGCTTCTTTGTGGCGGTGCCCGTGGCAGTAACTTTCCTGGATCAGGTTGCCTGCGTGGC
AAGAGTGGAAGGAGCATCAATGCAGCCTTCTTTGAATCCCGGGGGGAGCCAATCGTCTGA
TGTGGTGCTTTTGAACCACTGGAAAGTGAGGAATTTTGAAGTACAACGTGGTGACATTGT
GTCATTAGTGTCCCCGAAGAACCCGGAACAGAAGATCATTAAAAGAGTGATTGCTCTTGA
AGGAGATATTGTAAAAACCATGGGACACAAAAACCGCTATGTCAAAGTCCCTCGGGGTCA
CATCTGGGTCGAAGGTGATCATCACGGACACAGTTTTGACAGTAACTCCTTTGGGCCGGT
TTCCTTGGGGCTCTTGCATGCCCATGCTACACATATCCTGTGGCCTCCAGAGCGCTGGCA
GAAATTGGAATCTGTTCTTCCTCCAGAGCGCTTGCCCGTTCAGACTGAAGAGGAGTGCCT
GCATGGATCTCCCTGAGCTGCTGCTGTGGAGAGGCCACCACCACCACCACCAATCACAGG
AAGAGGGATAGATAAGAGACACACTCCAAAAGGCAAAGCTTCCCACAATATGATGCTGTG
CAAGATACATTTCTATCACATTAGGATGACCTGTATTACTAGAGAAAGAGTTGGAAAAGA
TTAAATGGCACCAGATTTTGTTAAATTGTAATACCATTTTGTTTAATGCCAAAAAATGCA
GACATTTGGGAATATGAATATTTTATTCCTATATGTTTTTAAAGAGGATAAATTTTGGGT
TTTGTTTTATGCATACATATTCTGTTGATTGATAGGTTTCAATTTTGCTGCTGGCTGCTG
GATAGAAATGAAAACTAATATTTGATGAAAGTAAATGACATCAGTCAATTACTCTTAAGA
TGGAACTTAAAGAAACATATTATGCGCATAGTGATGGGAATTACACTGTAATTGACAGTA
TGTACAACGCAGTGACTGCCAGTTAGGAAGAACAGTAAACTGTGATGTAAAAATAAAACA
CTGATTTGCTCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|51095135|gb|EAL24378.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51095135|gb|EAL24378.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               706-1392, gnl|bosTau2|chr4 (30279502-30280154)
               

               
               706-1392, gnl|Hg17|chr7 (109897743-109897057)
               

               
               706-1392, gnl|Mm7|chr12 (39830916-39831538)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               706-1392, gnl|bosTau2|chr4 (30279502-30280154)
               

               
               706-1392, gnl|Hg17|chr7 (109897743-109897057)
               

               
               706-1392, gnl|Mm7|chr12 (39830916-39831538)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               thg (0.380373)
               

               
               mgp (0.230681)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.380373)
               

               
               mgp (0.230681)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

	706-1392, gnl\|bosTau2\|chr4 (30279502-30280154)
	706-1392, gnl\|Hg17\|chr7 (109897743-109897057)
	706-1392, gnl\|Mm7\|chr12 (39830916-39831538)

	thg (0.380373)
	mgp (0.230681)
	cmu (0.186393)
	gul (0.177588)
	rec (0.17307)
	mcp (0.170648)
	isp (0.150376)
	ski (0.146735)
	ste (0.135208)
	lyg (0.133103)
	ret (0.128733)
	tra (0.123092)