Non-Coding RNA Search

Ss1.1-rlyg20_m4.5

Sequence:


               
               TAAGTGAAGTTAAGCATTTTAGAACAAAGTATAATTTAACTTTCAAGCAAATGTTTCCAA
GGAAACATTTTATAATTAAAAATTACATTTAATTTTAACACTGTTCCTAAGCAAATGTAA
TTAGCTCCATAAAGCTCAAATGAAGTCAAATAATTATTTACTGTGGCAGGAAAAGAAAGC
CAATGAGGGTTTGCAAAACTTCTCTAAGGCCCTTTGGCTGAAATAACTTCTCTTTGGTGC
TACATACTGAAAGTGACTGTTTAATCATCATTCATGTCACACCGTGCTCCCTCGCCCTCA
GGCCTGAGATGGGTCTCCAGACTCCACCAGTGAATCAGCATGACACCTTCTTTAACTGTG
TGAGCGACGTTCCTAACAAAGTAAGGTGTGGGGATGAAGCTCTGGTTAAAGCCACTCTTT
TGCTGTGCTCCGATCTGTTCTATCCGCTTCTGAGAGCAACCTTCATGATTACAGCAATTA
ATGTTTGCACAGAGCCCAGATTATACAGCAGTGGGTCATTGTGCTTCATTATTCAAGAAT
GAAGATAAAGACAAATAGAGGATTAGTAAAATATATTAAATGTGCAATACCACTTAAATG
ACTCTTAATGTTTATATTGAATTTCCAAAGCGATTAAATAAAAAAGAGCTATTTTTTGTT
ATTGCCAAACAATATTTTTTGTATTTCTCTATTTTCATAATGAGCAAATAGCATCCTATA
AATCTGTTTATCTCTTCTTTGTAGTGTGTTTTCATATAAATCCACAAGTAGAAAATCTTT
TCATCTGTGGCATATTTCTATGACTGACAAATGCAAGATCTAGAAAAATTAAATGTTTGA
TTATGCCATTTTGGAAATGCATATTTACCACAAAACCTATGTGACTGAATAATGTCAAAT
AAAATTTTATGAATCATTTTAAACAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGTGAAGTTAAGCATTTTAGAACAAAGTATAATTTAACTTTCAAGCAAATGTTTCCAA
GGAAACATTTTATAATTAAAAATTACATTTAATTTTAACACTGTTCCTAAGCAAATGTAA
TTAGCTCCATAAAGCTCAAATGAAGTCAAATAATTATTTACTGTGGCAGGAAAAGAAAGC
CAATGAGGGTTTGCAAAACTTCTCTAAGGCCCTTTGGCTGAAATAACTTCTCTTTGGTGC
TACATACTGAAAGTGACTGTTTAATCATCATTCATGTCACACCGTGCTCCCTCGCCCTCA
GGCCTGAGATGGGTCTCCAGACTCCACCAGTGAATCAGCATGACACCTTCTTTAACTGTG
TGAGCGACGTTCCTAACAAAGTAAGGTGTGGGGATGAAGCTCTGGTTAAAGCCACTCTTT
TGCTGTGCTCCGATCTGTTCTATCCGCTTCTGAGAGCAACCTTCATGATTACAGCAATTA
ATGTTTGCACAGAGCCCAGATTATACAGCAGTGGGTCATTGTGCTTCATTATTCAAGAAT
GAAGATAAAGACAAATAGAGGATTAGTAAAATATATTAAATGTGCAATACCACTTAAATG
ACTCTTAATGTTTATATTGAATTTCCAAAGCGATTAAATAAAAAAGAGCTATTTTTTGTT
ATTGCCAAACAATATTTTTTGTATTTCTCTATTTTCATAATGAGCAAATAGCATCCTATA
AATCTGTTTATCTCTTCTTTGTAGTGTGTTTTCATATAAATCCACAAGTAGAAAATCTTT
TCATCTGTGGCATATTTCTATGACTGACAAATGCAAGATCTAGAAAAATTAAATGTTTGA
TTATGCCATTTTGGAAATGCATATTTACCACAAAACCTATGTGACTGAATAATGTCAAAT
AAAATTTTATGAATCATTTTAAACAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               40-155, - strand, RNAz p=0.795191
               

               
               773-885, - strand, RNAz p=0.515235

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-155, - strand, RNAz p=0.795191
               

               
               773-885, - strand, RNAz p=0.515235

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-926, gnl|bosTau2|chr3 (39120522-39121437)
               

               
               1-926, gnl|Hg17|chr1 (97256193-97255320)
               

               
               1-926, gnl|Mm7|chr3 (119204486-119205349)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-926, gnl|bosTau2|chr3 (39120522-39121437)
               

               
               1-926, gnl|Hg17|chr1 (97256193-97255320)
               

               
               1-926, gnl|Mm7|chr3 (119204486-119205349)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               kid (1.03788)
               

               
               lyg (0.399308)
               

               
               thg (0.380373)
               

               
               gul (0.355177)
               

               
               ski (0.29347)
               

               
               ret (0.257467)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               ctl (0.153069)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (1.03788)
               

               
               lyg (0.399308)
               

               
               thg (0.380373)
               

               
               gul (0.355177)
               

               
               ski (0.29347)
               

               
               ret (0.257467)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               ctl (0.153069)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	40-155, - strand, RNAz p=0.795191
	773-885, - strand, RNAz p=0.515235

	1-926, gnl\|bosTau2\|chr3 (39120522-39121437)
	1-926, gnl\|Hg17\|chr1 (97256193-97255320)
	1-926, gnl\|Mm7\|chr3 (119204486-119205349)

	kid (1.03788)
	lyg (0.399308)
	thg (0.380373)
	gul (0.355177)
	ski (0.29347)
	ret (0.257467)
	cmu (0.186393)
	sag (0.182715)
	duo (0.172801)
	nco (0.161734)
	mga (0.160205)
	ctl (0.153069)
	isp (0.150376)
	fat (0.147427)
	lin (0.145603)
	ova (0.129132)
	sug (0.127291)
	tra (0.123092)
	spc (0.113366)
	jej (0.0989218)