Non-Coding RNA Search

Ss1.1-rlyg21_e2.5

Sequence:


               
               AGTGTACCTGATTCAAAAGGAAACACATGGTTTTCTAGAACAGCCCCTACCAGAGCCTCC
TGAATTCTGTGGGCACCACGTGCTGCTGCTGAGCATTCGCCCAGACTTTGTGCCCGACCA
CAGAACCGGGGAGTCTGTGGAAGGAGTTTTGTAAAGGAGAAAAAAAAAAAATTTTTTTTT
CAATGTAGCAAAATCAAAACAAAAAAAAGAAAAAAGAAAAAAAGAAGATGCCGACAGTGC
GAAGTCTAGCCTTTTGTAACCTTCATATTGCACACTAGGACTATAAGCCATTGCTAGCTC
ATTTTGAATTTTAACGTGTAATTTTTGTTTTATTTTCTTTCCGTGGGGAAAACAATGCTT
GATCCACCAATGCTCTTTTTAATGTTTTATAACTATGTATGTGTATATATATAAATATAA
AATAATATGTATGCACATATGTGTGTATATATCTATATGTATATACATATATAGATATAT
AGAGATATATAGAGAGGTTTTGAGACGAAAATGCAAAACGTGAAAACCGAACTGAACAGC
GTGTGCTCTGATTACTTGAATCTGGTCTCCTCGGCACCTGGTTATTAAGAACTGAATATT
TTTCCACTTGAATTTAGTGCTATTAGAAATTTAATATATGTGTTTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGTACCTGATTCAAAAGGAAACACATGGTTTTCTAGAACAGCCCCTACCAGAGCCTCC
TGAATTCTGTGGGCACCACGTGCTGCTGCTGAGCATTCGCCCAGACTTTGTGCCCGACCA
CAGAACCGGGGAGTCTGTGGAAGGAGTTTTGTAAAGGAGAAAAAAAAAAAATTTTTTTTT
CAATGTAGCAAAATCAAAACAAAAAAAAGAAAAAAGAAAAAAAGAAGATGCCGACAGTGC
GAAGTCTAGCCTTTTGTAACCTTCATATTGCACACTAGGACTATAAGCCATTGCTAGCTC
ATTTTGAATTTTAACGTGTAATTTTTGTTTTATTTTCTTTCCGTGGGGAAAACAATGCTT
GATCCACCAATGCTCTTTTTAATGTTTTATAACTATGTATGTGTATATATATAAATATAA
AATAATATGTATGCACATATGTGTGTATATATCTATATGTATATACATATATAGATATAT
AGAGATATATAGAGAGGTTTTGAGACGAAAATGCAAAACGTGAAAACCGAACTGAACAGC
GTGTGCTCTGATTACTTGAATCTGGTCTCCTCGGCACCTGGTTATTAAGAACTGAATATT
TTTCCACTTGAATTTAGTGCTATTAGAAATTTAATATATGTGTTTTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               340-456, + strand, RNAz p=0.839226

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               340-456, + strand, RNAz p=0.839226

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               399-555, - strand, RNAmicro p=0.99812
               

               
               414-532, + strand, RNAmicro p=0.996401

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               399-555, - strand, RNAmicro p=0.99812
               

               
               414-532, + strand, RNAmicro p=0.996401

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK130996, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK130996, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-648, gnl|bosTau2|chr16 (22628812-22629442)
               

               
               3-648, gnl|Hg17|chr1 (10631659-10631004)
               

               
               3-648, gnl|Mm7|chr4 (147943715-147944361)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-648, gnl|bosTau2|chr16 (22628812-22629442)
               

               
               3-648, gnl|Hg17|chr1 (10631659-10631004)
               

               
               3-648, gnl|Mm7|chr4 (147943715-147944361)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               lyg (0.798616)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.798616)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               jej (0.0989218)

	399-555, - strand, RNAmicro p=0.99812
	414-532, + strand, RNAmicro p=0.996401

	3-648, gnl\|bosTau2\|chr16 (22628812-22629442)
	3-648, gnl\|Hg17\|chr1 (10631659-10631004)
	3-648, gnl\|Mm7\|chr4 (147943715-147944361)

	lyg (0.798616)
	isp (0.150376)
	ski (0.146735)
	csk (0.140746)
	ssp (0.13552)
	jej (0.0989218)