Non-Coding RNA Search

Ss1.1-rlyg21_j11.5

Sequence:


               
               CACACCCATGGCATGCAGAAGTTCACAGGCCAGGGACCAAACGTGCCACAGCAGTGACAA
TACTGGATCCTTAACCTGCTGAGCTACAAAGGAACTCCCTCACGTTATTGTTAGAGTATT
TGCAGTTTTAAGATTAGAAACTTACATTCTGGACCTCCAAAAAATCTGAACACACTGCCC
CCTTTTCAGGTTGTACAGTACCATTGCTTCATCAGAGGTGATTTTAAAAATACATTAACA
TCTGTAGCCATGCTCTCTAAATGTGTTTGATTTAATTAGATCAAACCTGAAGATGCCATG
AAAGCCTGGTGGCCAAGAGAAGAGCTGTAAGTAGTAAATTTGTGGGTGCTTGAGTACAGA
TGTTAATTTACTAGAAAATTATCTGCCTAATGGGATAGCTAAGATTAGCAGGTAGGACAA
ATCCAGCTTTTCCTAAACATATAATTTGGTAAATAGCAATCATCTTTATCTTCTTTAGTT
AAGAGATGGACAACTAGCCTCAGACTACTGATAATGTACTTTGGCTTTTAAAATGAATAA
CTTGCTTTTTCTTTAACAGATAATCCCAGATCCAGCTGGAAAACTGAAGTATTTTGATAA
ACTGAACTGAAAAATACTTCCTCAGGTCAAGATGCTTGAAACTTTTCAATAAAGTTCACC
GTTTTATGTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACACCCATGGCATGCAGAAGTTCACAGGCCAGGGACCAAACGTGCCACAGCAGTGACAA
TACTGGATCCTTAACCTGCTGAGCTACAAAGGAACTCCCTCACGTTATTGTTAGAGTATT
TGCAGTTTTAAGATTAGAAACTTACATTCTGGACCTCCAAAAAATCTGAACACACTGCCC
CCTTTTCAGGTTGTACAGTACCATTGCTTCATCAGAGGTGATTTTAAAAATACATTAACA
TCTGTAGCCATGCTCTCTAAATGTGTTTGATTTAATTAGATCAAACCTGAAGATGCCATG
AAAGCCTGGTGGCCAAGAGAAGAGCTGTAAGTAGTAAATTTGTGGGTGCTTGAGTACAGA
TGTTAATTTACTAGAAAATTATCTGCCTAATGGGATAGCTAAGATTAGCAGGTAGGACAA
ATCCAGCTTTTCCTAAACATATAATTTGGTAAATAGCAATCATCTTTATCTTCTTTAGTT
AAGAGATGGACAACTAGCCTCAGACTACTGATAATGTACTTTGGCTTTTAAAATGAATAA
CTTGCTTTTTCTTTAACAGATAATCCCAGATCCAGCTGGAAAACTGAAGTATTTTGATAA
ACTGAACTGAAAAATACTTCCTCAGGTCAAGATGCTTGAAACTTTTCAATAAAGTTCACC
GTTTTATGTGAC

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               119-540, gnl|bosTau2|chrX (37471534-37471964)
               

               
               119-540, gnl|Hg17|chrX (23463611-23464062)
               

               
               119-540, gnl|Mm7|chrX (150125739-150125131)
               


               
               549-658, gnl|bosTau2|chrX (37471950-37472058)
               

               
               549-658, gnl|Hg17|chrX (23464018-23464157)
               

               
               549-658, gnl|Mm7|chrX (150125171-150125040)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               119-540, gnl|bosTau2|chrX (37471534-37471964)
               

               
               119-540, gnl|Hg17|chrX (23463611-23464062)
               

               
               119-540, gnl|Mm7|chrX (150125739-150125131)
               


               
               549-658, gnl|bosTau2|chrX (37471950-37472058)
               

               
               549-658, gnl|Hg17|chrX (23464018-23464157)
               

               
               549-658, gnl|Mm7|chrX (150125171-150125040)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               gul (0.177588)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)

	119-540, gnl\|bosTau2\|chrX (37471534-37471964)
	119-540, gnl\|Hg17\|chrX (23463611-23464062)
	119-540, gnl\|Mm7\|chrX (150125739-150125131)

	549-658, gnl\|bosTau2\|chrX (37471950-37472058)
	549-658, gnl\|Hg17\|chrX (23464018-23464157)
	549-658, gnl\|Mm7\|chrX (150125171-150125040)