Non-Coding RNA Search

Ss1.1-rlyg21_m14.5

Sequence:


               
               TAATAAGCTATTGGTATTGTAAGCTGAACAGAATGAGAATCATAGAGTAGATTTGAGGCA
ATCTCTTCCGAGGATAGAAAGAAAAATATACATTTCAACGTTGCCTTGAGATTTGACAAT
GGATTTGTGGAAACAAATAGCCCTGAATAATTCACCTTAAAACAGAAATAAACAGCCAGC
CAACCAGAAGTATGATGTTGGTATAGAATTTAAAGACTCAAGAGGCAGTTTTCTCTGACA
AGTTAATCTGTAGAATCCTCTAGTGCATATTAATGAGGTCTCCTTTATGTACTCTGTTCC
CAGGATTCTCAATTAATTGTGGGCTTCTGACTTTATGATCAAATTATGGAAACATGAGTT
ATTTAGCTTTGACAATGACTTGCTTTGTTTTAAAAAGATGTTGGTAACCAGTCAGTGTCT
AATCCTTGGGATGTTGGATGGAAAGCCTGCCATCTTCTTCCCTCATCGCTGGGGTTCTTG
AAGTTATTTTTATATTACTCTGGAATCAAATATTTTAAATTGTCCTTTTTTTTCTTTAAT
AGCCTCCCACAGTGATTGTTTGAAACTACCCATTTTATGAAGTTACTGGACCTAGAGTTC
ACCAAGCCACATGTTCCTTTCAGTCAGAAATACACACTAAAAGGAGGTGTACAGTCCATG
CAGTTTGAGAGCAGTAAGCCCCACTACATAAAAGTTACATCTACATTAAAAAAAAAAAAA
GTTGCACCTACATAAAGGTTAAGACTCAGGTATTGAACCTTTGATAGCATCAGTGACTTT
TTAATGATCCATAGAAGCAAAAGAATTAAATTCTACTCTTTAAAAAACCCCACACACGTA
CAACACAAATTTCTTATTTAAATTGATGACCTCCCCACATGTTCAAAATGGAACAAAAAG
CCCCATCTCATCATTTCTAGTAACATCGCTTTTTTTAAAAATCAGATTTTTCAAATCTGT
TAGAAACAATGGTATGAAGTGCCCTTATCTGCTCAGACGGGAGGAAGAACATTTTAAAGT
AGTGTTACACAGGAAATGATTATGCTTCAATTCCATAGTAGTTAAAAAGTGCTAAATACT
ACTTGAAATTCATTGTTTACAGATTAGTGACAAAGGCTGAAGATAGGATCCGGTTGGCCT
CTGACTTCCGGATGTCCTCAAAATACAGTACTTCCAAACCCAAGACCAGCCATAAGCTAT
TTTGCTTACATGTCAGAGTAATCTGTATTTTTGTATGTGATTTCTACTTTTATAGACTTG
TTTTAAAATAAAACACATTTTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATAAGCTATTGGTATTGTAAGCTGAACAGAATGAGAATCATAGAGTAGATTTGAGGCA
ATCTCTTCCGAGGATAGAAAGAAAAATATACATTTCAACGTTGCCTTGAGATTTGACAAT
GGATTTGTGGAAACAAATAGCCCTGAATAATTCACCTTAAAACAGAAATAAACAGCCAGC
CAACCAGAAGTATGATGTTGGTATAGAATTTAAAGACTCAAGAGGCAGTTTTCTCTGACA
AGTTAATCTGTAGAATCCTCTAGTGCATATTAATGAGGTCTCCTTTATGTACTCTGTTCC
CAGGATTCTCAATTAATTGTGGGCTTCTGACTTTATGATCAAATTATGGAAACATGAGTT
ATTTAGCTTTGACAATGACTTGCTTTGTTTTAAAAAGATGTTGGTAACCAGTCAGTGTCT
AATCCTTGGGATGTTGGATGGAAAGCCTGCCATCTTCTTCCCTCATCGCTGGGGTTCTTG
AAGTTATTTTTATATTACTCTGGAATCAAATATTTTAAATTGTCCTTTTTTTTCTTTAAT
AGCCTCCCACAGTGATTGTTTGAAACTACCCATTTTATGAAGTTACTGGACCTAGAGTTC
ACCAAGCCACATGTTCCTTTCAGTCAGAAATACACACTAAAAGGAGGTGTACAGTCCATG
CAGTTTGAGAGCAGTAAGCCCCACTACATAAAAGTTACATCTACATTAAAAAAAAAAAAA
GTTGCACCTACATAAAGGTTAAGACTCAGGTATTGAACCTTTGATAGCATCAGTGACTTT
TTAATGATCCATAGAAGCAAAAGAATTAAATTCTACTCTTTAAAAAACCCCACACACGTA
CAACACAAATTTCTTATTTAAATTGATGACCTCCCCACATGTTCAAAATGGAACAAAAAG
CCCCATCTCATCATTTCTAGTAACATCGCTTTTTTTAAAAATCAGATTTTTCAAATCTGT
TAGAAACAATGGTATGAAGTGCCCTTATCTGCTCAGACGGGAGGAAGAACATTTTAAAGT
AGTGTTACACAGGAAATGATTATGCTTCAATTCCATAGTAGTTAAAAAGTGCTAAATACT
ACTTGAAATTCATTGTTTACAGATTAGTGACAAAGGCTGAAGATAGGATCCGGTTGGCCT
CTGACTTCCGGATGTCCTCAAAATACAGTACTTCCAAACCCAAGACCAGCCATAAGCTAT
TTTGCTTACATGTCAGAGTAATCTGTATTTTTGTATGTGATTTCTACTTTTATAGACTTG
TTTTAAAATAAAACACATTTTTAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               2-301, gnl|bosTau2|chr11 (67335559-67335257)
               

               
               2-301, gnl|Hg17|chrX (95683509-95683798)
               

               
               2-301, gnl|Mm7|chr15 (9171174-9170910)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-301, gnl|bosTau2|chr11 (67335559-67335257)
               

               
               2-301, gnl|Hg17|chrX (95683509-95683798)
               

               
               2-301, gnl|Mm7|chr15 (9171174-9170910)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               sag (0.36543)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               fli (0.202881)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.36543)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               fli (0.202881)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

	2-301, gnl\|bosTau2\|chr11 (67335559-67335257)
	2-301, gnl\|Hg17\|chrX (95683509-95683798)
	2-301, gnl\|Mm7\|chr15 (9171174-9170910)

	sag (0.36543)
	ova (0.258264)
	ret (0.257467)
	thg (0.253582)
	fli (0.202881)
	spl (0.143184)
	lyg (0.133103)
	ese (0.126502)
	med (0.116252)
	nbm (0.0993246)