Non-Coding RNA Search

Ss1.1-rlyg21_n12.5

Sequence:


               
               ACAAATACGGGCATACTGCTGGAGAAGCTACACACGATGCAGTAGACTCTGCCATCAATG
TTGGTGTAACTGCCTATAATATCGACAACATTGGCATCAAAGCAATGGTGAAGAAAACTG
CAAAACAAACGGGACACACACTCCTTGAGGACTATAAAATAATTGATAAGTCAAAGGGGG
AAAATCAAAGAGGAGGAGCAGGTGCAAACGTGAAAGAGGAGAAGGGTGAGCAGACAGAGG
AGCTAGAGAAGAATGGGGCAAAGAAGAAAGACAAATGATGGAAGTGCTACGGATTGCCTA
TACCAAAGCCTTACAGATGGATGCGATTTTGTAAAATAGGCAAATATGGAATTCCCCGCA
GATTAACCGGGATTTAAAATTGTATTCTTTCCTACAGAGTGACTATTCCATGAGCTTTAC
GGCATGTATTCTACTTACAAGGAAGAGTCTGGCCTTGAGATATATATTCTTTGTGAGTTT
ATTTTTTCCCAAATGGCTAAAATATTTTTGATGTTAAAATAAGACTAATAATGTGCTATA
AACCTCATTAAACCTAATGTTAAAATATTTTTGTATTTACTGTCTTTCAGAAAGCAGAGT
AGGAAATTATATATTTACATAAAATTTCACATTTCGTTCTGTTTTTACTGGAAAGGGATG
ACTTAAAATATTGTCTGTTTTTGCACTAATTGTGGATTTTCTTTATAGATGCTTGTTGGA
ACTTTCAGTATGTAAGCTAAACAAAAACTGTAATCCCAAACTAAAATAATTATCCCATAA
AACTTAGAAGACTTTTTCAAAACAAGGAATAGACTAATCATGAAAAATGAGGTTCTATAA
AATCATTTGGTAGTTTATCTGTTTGTTAGGAAATAGGATGGTCTTTTTGATTTAAAATGT
ATACAAATAGATTTTTTAGTCTTTTAGATTTAGACTGTTGTTGATCTGTAAGGGATGTCA
GTTTGGGAGTATGGTTGGTATTGTATCAGCATTCATAGTGATTATTACCACTTTAGTTGA
ACAAAAAATAATCACTTTTACCATATCTACTTCTGTAAGTTTTTTCGAAAGGCTGAATTT
TTTAGCCTAAATATAAAATAAAAATATAAATAGTTGAGTTTATGGATGGTAATTTTTATT
TTGGGATTCAGTCGTTGGAATTTTACATATTAAGGAGCCAGTAGATTAAATTATTAGAAA
GATTTTATTCATAATTAAGGAAAAGAATGTGAAGACTTTAGGCTTAATCCATGGTAAGGT
GGGTGTAAGTGTTCACTTTGGCAGAAGACACGCTATTCACAGACCTATAAGGTACAAATA
TATAAATAAATAGCTAATGGCATTTTGTTTTTGTTTACTGATTTAAAGATTGGCATTGAT
TTTCATAGTGTAGTCCCTTCTAATATTTCTGAACCTCCAATTGCTATGTAGCTTCTTAGG
CTTTATTTGAAACTATCTAAAAAATGTACTTTGTGAATAAACTATCTTTGAATTACTTGG
CCTCAAAACGTATTCACTGGTTTGTATTTCAGAAAGACGGAATTGGTGGAGCCTTTCCCT
AGGGCCAAGGATGATGTACTAGTTAAAATGGAAATAAAATTGAATTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAAATACGGGCATACTGCTGGAGAAGCTACACACGATGCAGTAGACTCTGCCATCAATG
TTGGTGTAACTGCCTATAATATCGACAACATTGGCATCAAAGCAATGGTGAAGAAAACTG
CAAAACAAACGGGACACACACTCCTTGAGGACTATAAAATAATTGATAAGTCAAAGGGGG
AAAATCAAAGAGGAGGAGCAGGTGCAAACGTGAAAGAGGAGAAGGGTGAGCAGACAGAGG
AGCTAGAGAAGAATGGGGCAAAGAAGAAAGACAAATGATGGAAGTGCTACGGATTGCCTA
TACCAAAGCCTTACAGATGGATGCGATTTTGTAAAATAGGCAAATATGGAATTCCCCGCA
GATTAACCGGGATTTAAAATTGTATTCTTTCCTACAGAGTGACTATTCCATGAGCTTTAC
GGCATGTATTCTACTTACAAGGAAGAGTCTGGCCTTGAGATATATATTCTTTGTGAGTTT
ATTTTTTCCCAAATGGCTAAAATATTTTTGATGTTAAAATAAGACTAATAATGTGCTATA
AACCTCATTAAACCTAATGTTAAAATATTTTTGTATTTACTGTCTTTCAGAAAGCAGAGT
AGGAAATTATATATTTACATAAAATTTCACATTTCGTTCTGTTTTTACTGGAAAGGGATG
ACTTAAAATATTGTCTGTTTTTGCACTAATTGTGGATTTTCTTTATAGATGCTTGTTGGA
ACTTTCAGTATGTAAGCTAAACAAAAACTGTAATCCCAAACTAAAATAATTATCCCATAA
AACTTAGAAGACTTTTTCAAAACAAGGAATAGACTAATCATGAAAAATGAGGTTCTATAA
AATCATTTGGTAGTTTATCTGTTTGTTAGGAAATAGGATGGTCTTTTTGATTTAAAATGT
ATACAAATAGATTTTTTAGTCTTTTAGATTTAGACTGTTGTTGATCTGTAAGGGATGTCA
GTTTGGGAGTATGGTTGGTATTGTATCAGCATTCATAGTGATTATTACCACTTTAGTTGA
ACAAAAAATAATCACTTTTACCATATCTACTTCTGTAAGTTTTTTCGAAAGGCTGAATTT
TTTAGCCTAAATATAAAATAAAAATATAAATAGTTGAGTTTATGGATGGTAATTTTTATT
TTGGGATTCAGTCGTTGGAATTTTACATATTAAGGAGCCAGTAGATTAAATTATTAGAAA
GATTTTATTCATAATTAAGGAAAAGAATGTGAAGACTTTAGGCTTAATCCATGGTAAGGT
GGGTGTAAGTGTTCACTTTGGCAGAAGACACGCTATTCACAGACCTATAAGGTACAAATA
TATAAATAAATAGCTAATGGCATTTTGTTTTTGTTTACTGATTTAAAGATTGGCATTGAT
TTTCATAGTGTAGTCCCTTCTAATATTTCTGAACCTCCAATTGCTATGTAGCTTCTTAGG
CTTTATTTGAAACTATCTAAAAAATGTACTTTGTGAATAAACTATCTTTGAATTACTTGG
CCTCAAAACGTATTCACTGGTTTGTATTTCAGAAAGACGGAATTGGTGGAGCCTTTCCCT
AGGGCCAAGGATGATGTACTAGTTAAAATGGAAATAAAATTGAATTGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61880285|ref|XP_598356.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61880285|ref|XP_598356.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               5-1606, gnl|bosTau2|chr11 (80181963-80183620)
               

               
               5-1606, gnl|Hg17|chr13 (35776769-35775169)
               

               
               5-1606, gnl|Mm7|chr3 (55264735-55266749)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1606, gnl|bosTau2|chr11 (80181963-80183620)
               

               
               5-1606, gnl|Hg17|chr13 (35776769-35775169)
               

               
               5-1606, gnl|Mm7|chr3 (55264735-55266749)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

Help | Less info


               
               rec (0.519211)
               

               
               amn (0.417711)
               

               
               lyg (0.399308)
               

               
               fty (0.351679)
               

               
               eye (0.341006)
               

               
               vin (0.332557)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eje (0.0988338)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.519211)
               

               
               amn (0.417711)
               

               
               lyg (0.399308)
               

               
               fty (0.351679)
               

               
               eye (0.341006)
               

               
               vin (0.332557)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eje (0.0988338)

	5-1606, gnl\|bosTau2\|chr11 (80181963-80183620)
	5-1606, gnl\|Hg17\|chr13 (35776769-35775169)
	5-1606, gnl\|Mm7\|chr3 (55264735-55266749)

	rec (0.519211)
	amn (0.417711)
	lyg (0.399308)
	fty (0.351679)
	eye (0.341006)
	vin (0.332557)
	liv (0.292569)
	ret (0.257467)
	cbe (0.239234)
	mgp (0.230681)
	spc (0.226732)
	nlu (0.191681)
	sag (0.182715)
	mgm (0.180343)
	ton (0.1755)
	fco (0.157208)
	tbr (0.154178)
	ski (0.146735)
	lin (0.145603)
	nca (0.136874)
	nmm (0.132802)
	kid (0.129735)
	sug (0.127291)
	thg (0.126791)
	ese (0.126502)
	bla (0.124347)
	eje (0.0988338)