Non-Coding RNA Search

Ss1.1-rlyg22_l17.5

Sequence:


               
               AAATATTAATCTTATATAGATATTAAATTTACCCCCAAGTATTCTCAGAACTGATTCCTT
AGAAGTTGATTTTACACTGTTGACATTTTAATATTAGGGATGTATAATGATATAAAAAGT
GATAAAGCTAATACAGATTTTTTTTTTCAATAAGATCACCTTCAAGCTCACTCTTAATTT
CTTTACTTGACATAGTATGGGATCTCTCAGGGAGCAAGTTTTAAAAGAATACTAATGGCC
TTTAAGAACAAACAGGAAAAATAATCTGATTTTTTAAATTATAGGTATTGTTTGTTTCAC
TCTGATATGGCCCAAGGACTTTTTTTTAAAAGGCAAGAGAAATCTTTTAGAGCTAACTGT
TTATTTCTAAGAATTTGGTGGTCCTTATTGGTAATGATGGCTTTTACTACATTTGTCATT
CCTCTCTTTAGCTTAGTTACCATAGAATGCTTCTGAGCTTTACTACTCCTATATAATTCA
CTTTAAATATGCCAGGATATTTGATGATTCATTTTATTTGGAATGAGATGGCAATGCTAA
TTATACTGTCCTTATTACTTGAGGATTAACCTTCTGACTTAAAGGAAAACGAGCTTTGAT
TTGTACTGGATGTGGTCTTTGGCTCGGTCCCATTGAGGCTAGTAGCAAACATTTAGAAGA
TGACTAAATGGGATTTGGAATATATGTCTCAATTTGAGAAACCAAATAATGCTAAGGGAC
CCATGTGGTCACACCTGTGACCTTGGCTTCACTTGCACCTTGTTTTAACTAACTGAGGTG
ATAGGCACTTAGTACCTATAGAAATGGACTGGAATTCTGAATCATACATATGTAACATCA
CAATCTTCCTGGTTTTCAGAATAAAACTCTTTTTGTGCTTTTGATATAAATATATACAAT
ATAATAAAATGTTTGACTAATTTATATGGTAGTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATATTAATCTTATATAGATATTAAATTTACCCCCAAGTATTCTCAGAACTGATTCCTT
AGAAGTTGATTTTACACTGTTGACATTTTAATATTAGGGATGTATAATGATATAAAAAGT
GATAAAGCTAATACAGATTTTTTTTTTCAATAAGATCACCTTCAAGCTCACTCTTAATTT
CTTTACTTGACATAGTATGGGATCTCTCAGGGAGCAAGTTTTAAAAGAATACTAATGGCC
TTTAAGAACAAACAGGAAAAATAATCTGATTTTTTAAATTATAGGTATTGTTTGTTTCAC
TCTGATATGGCCCAAGGACTTTTTTTTAAAAGGCAAGAGAAATCTTTTAGAGCTAACTGT
TTATTTCTAAGAATTTGGTGGTCCTTATTGGTAATGATGGCTTTTACTACATTTGTCATT
CCTCTCTTTAGCTTAGTTACCATAGAATGCTTCTGAGCTTTACTACTCCTATATAATTCA
CTTTAAATATGCCAGGATATTTGATGATTCATTTTATTTGGAATGAGATGGCAATGCTAA
TTATACTGTCCTTATTACTTGAGGATTAACCTTCTGACTTAAAGGAAAACGAGCTTTGAT
TTGTACTGGATGTGGTCTTTGGCTCGGTCCCATTGAGGCTAGTAGCAAACATTTAGAAGA
TGACTAAATGGGATTTGGAATATATGTCTCAATTTGAGAAACCAAATAATGCTAAGGGAC
CCATGTGGTCACACCTGTGACCTTGGCTTCACTTGCACCTTGTTTTAACTAACTGAGGTG
ATAGGCACTTAGTACCTATAGAAATGGACTGGAATTCTGAATCATACATATGTAACATCA
CAATCTTCCTGGTTTTCAGAATAAAACTCTTTTTGTGCTTTTGATATAAATATATACAAT
ATAATAAAATGTTTGACTAATTTATATGGTAGTATT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               4-936, gnl|bosTau2|chr8 (18584596-18583682)
               

               
               4-936, gnl|Hg17|chr9 (4696699-4697676)
               

               
               4-936, gnl|Mm7|chr19 (28716533-28717421)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-936, gnl|bosTau2|chr8 (18584596-18583682)
               

               
               4-936, gnl|Hg17|chr9 (4696699-4697676)
               

               
               4-936, gnl|Mm7|chr19 (28716533-28717421)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               liv (0.438853)
               

               
               mgm (0.180343)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.438853)
               

               
               mgm (0.180343)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)

	4-936, gnl\|bosTau2\|chr8 (18584596-18583682)
	4-936, gnl\|Hg17\|chr9 (4696699-4697676)
	4-936, gnl\|Mm7\|chr19 (28716533-28717421)

	liv (0.438853)
	mgm (0.180343)
	fat (0.147427)
	lin (0.145603)
	hyp (0.142837)
	pty (0.142714)
	lnt (0.142308)
	lyg (0.133103)
	ova (0.129132)