Non-Coding RNA Search

Ss1.1-rlyg22_p23.5

Sequence:


               
               GGAACCCGTGCCACAGTAGCATCCCAAGCTGCTGCAGTGACAGCACCAGATCTTTAACCC
ACTGCGCCACAAGGGGGACTCCAGGACATCAACAGTTTGAATCTGGAAGACATATTTTTC
ATTTTCAAATTCACATATCCTTCAAGAGTCCATGTTGTAAATAGCATTTAAGAGCAAATG
TATAACCTTCTTCAAGTCATTTATGGATAGAGTCAAGGCACAATTACACAGTCTTTCTTT
TTTTTTTGGCTGCACCTGCAGGGTGCCTAAGTTCCCCGGGCCAGGGATTGAACCCATGCC
ACAGCAGTGACAACACTGGATCCTTAACCCACTGAGCCTCCGATTACATATTCTTTGTAT
ATACTTTTATAGACATTTTTTGTAATGTATGCTCACTACATTATACAGTTTTATACGATA
CAATCTTAATTTAAATGTGTGTGATAAACCATACATCCCTACTGTAGACAAGGCAAATAG
TGACATGGAGTTGGATATCTTGTGGGCCATGAGAAGAAATTCAGAGAGCTCATGAACATG
TACTGTATTCGAATTTTAATAAGCTAATATATTAACTTTTAAAGTTTTAAAAAGGATTTG
TTCAGGTGTGTGTGGAATGCATTACATATTATTTGTGTGCTATACACACATAGGAAATAT
ATGTTTGTCATGTATCAAAAAATGGTCTCGATTTATCTGTAATTATATTTATAATAATAA
TAAATTTAGCTTCTCACCGACAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACCCGTGCCACAGTAGCATCCCAAGCTGCTGCAGTGACAGCACCAGATCTTTAACCC
ACTGCGCCACAAGGGGGACTCCAGGACATCAACAGTTTGAATCTGGAAGACATATTTTTC
ATTTTCAAATTCACATATCCTTCAAGAGTCCATGTTGTAAATAGCATTTAAGAGCAAATG
TATAACCTTCTTCAAGTCATTTATGGATAGAGTCAAGGCACAATTACACAGTCTTTCTTT
TTTTTTTGGCTGCACCTGCAGGGTGCCTAAGTTCCCCGGGCCAGGGATTGAACCCATGCC
ACAGCAGTGACAACACTGGATCCTTAACCCACTGAGCCTCCGATTACATATTCTTTGTAT
ATACTTTTATAGACATTTTTTGTAATGTATGCTCACTACATTATACAGTTTTATACGATA
CAATCTTAATTTAAATGTGTGTGATAAACCATACATCCCTACTGTAGACAAGGCAAATAG
TGACATGGAGTTGGATATCTTGTGGGCCATGAGAAGAAATTCAGAGAGCTCATGAACATG
TACTGTATTCGAATTTTAATAAGCTAATATATTAACTTTTAAAGTTTTAAAAAGGATTTG
TTCAGGTGTGTGTGGAATGCATTACATATTATTTGTGTGCTATACACACATAGGAAATAT
ATGTTTGTCATGTATCAAAAAATGGTCTCGATTTATCTGTAATTATATTTATAATAATAA
TAAATTTAGCTTCTCACCGACAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               83-247, gnl|bosTau2|chr19 (12487416-12487252)
               

               
               83-247, gnl|Hg17|chr17 (27680866-27680711)
               

               
               83-247, gnl|Mm7|chr11 (80443319-80442522)
               


               
               343-742, gnl|bosTau2|chr19 (12487276-12486886)
               

               
               343-742, gnl|Hg17|chr17 (27680731-27679571)
               

               
               343-742, gnl|Mm7|chr11 (80442542-80441942)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-247, gnl|bosTau2|chr19 (12487416-12487252)
               

               
               83-247, gnl|Hg17|chr17 (27680866-27680711)
               

               
               83-247, gnl|Mm7|chr11 (80443319-80442522)
               


               
               343-742, gnl|bosTau2|chr19 (12487276-12486886)
               

               
               343-742, gnl|Hg17|chr17 (27680731-27679571)
               

               
               343-742, gnl|Mm7|chr11 (80442542-80441942)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               cbe (0.717703)
               

               
               pan (0.23596)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.717703)
               

               
               pan (0.23596)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	83-247, gnl\|bosTau2\|chr19 (12487416-12487252)
	83-247, gnl\|Hg17\|chr17 (27680866-27680711)
	83-247, gnl\|Mm7\|chr11 (80443319-80442522)

	343-742, gnl\|bosTau2\|chr19 (12487276-12486886)
	343-742, gnl\|Hg17\|chr17 (27680731-27679571)
	343-742, gnl\|Mm7\|chr11 (80442542-80441942)

	cbe (0.717703)
	pan (0.23596)
	aor (0.195274)
	sag (0.182715)
	rec (0.17307)
	lyg (0.133103)
	ret (0.128733)
	tra (0.123092)
	spc (0.113366)