Ss1.1-rlyg23_c2.5
|
CATCTACCAGGTGAGATTGAAAGATTCACTTGTCAGCTCCCTTCAGTTTTGTAAGGCAAA
AGATGCTGAATTAGCTTGGATAGACGGTGTCTTAGACATGAGAGTTTCCAAAGTAGACAC
AGGAGTTATTTTAGAAGAAGGAGAGCTAAAGGATGACGGCGAAGACGCAGAAATGCAGGT
GGACGCTCCTTCAGACTCCAGCGTCATAGCCCAGCAGAAGGCCATGAAGAGTCTGTTCGG
AGATGATGAGAAAGAAACAGGTGAAGAAAGTGAGATCATTCCTACACTGGAACCCTTACC
ACCTCATGAGGTTCCTGGACATCAGTCAGTTTTTATGAACGAACCAAGACTCTCTGACTT
CAAACAAGTTCTTTTACGAGAGGGGATCCAAGCTGAATTTGTAGGCGGTGTCCTCGTTTG
CAACAATCAAGTGGCAGTCCGTAGAACGGAAACTGGACGCATTGGATTAGAAGGCTGCCT
TTGTCAAGATTTTTATAGGATAAGAGACCTTTTATATGAACAGTATGCCATTGTGTAAAG
GACATGATGTCAAGAAGTATCTGTTTGACCTTTCTAAGAAAAAAGGATCTAAGAAAAAAG
AACTCTTACTCTAAGCTTTTGCTTTTTTGTTTTGTAACATACAAAAAGAATCTGCCAGAA
AAACTTAACATGCATTAGATTTTTAAAAGTGTAAGTGGAAACCATATCATTGCTAATGCT
CCAGTGAGCATGCGACCTTTTGGCTTTCGGCGTGATAGAGATCCTTACAAGTGTGCAGCC
CTGGCTGAAGGTGACTGGCTTCCTTTTCACACCCCTTATTCTAGAAGGGCTTTTTACTTG
AATAAAACAGTGCAACTTAGCAAACCAGTTCATGGCCTTCAAGAAACATGTTTGCATGAA
TTCTTGTAAACGGTTTCTTCCATATTCTGGAATGAAAAGTGAGACTTTACTTAGAAAGGA
TGTGCTGTAAAAAACCTGATAAAACAGCTTTTTGAGGCTTATCTCTTTCAAAAACAAAAA
AACCCAGTATACGTGCTCTAGTTCTTTGGAATTCCTCTATGCAGTTTTCTTCACATTCAG
CTTCGCTCTTCATGACTGCGTTTCACGGTGGTTTTACTCTGCTGTGAGATAGTACACATC
TGGTTCAGAAATCAGTTTTTATTTCTCCCATTTCTTGTTCCATTAAGATCTTGTTGTTGT
TGAGCTTAAGTTATAACACCACAAAGTTATAAAAGTTATAAAAGTTCAAAAGTTATAACA
TTTGAATATACGTCATTCAAAAAAAAACCTCCTTGATGTGTTCTAGTCTTAAGGGTTCTG
CATGCATTTTAGACACATCTTAACCATCAGCTGGGATGCTGTGTTGGAGACGGTTTAGTG
TTTTGCTTTTAGGGAAATAAATGTTGAACTTCATATTTTTTAATAAGGTAATAGTATAAT
GAAAAGGTGTAAATGTTTTCATCTCTTAGGCATGCTCTCTCCCAAGGTTGCCCAAGCAGT
GGTTGGTTTTTATACATATTACTTCAGAAATTATATGGAAGTTGAGAC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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CATCTACCAGGTGAGATTGAAAGATTCACTTGTCAGCTCCCTTCAGTTTTGTAAGGCAAA
AGATGCTGAATTAGCTTGGATAGACGGTGTCTTAGACATGAGAGTTTCCAAAGTAGACAC
AGGAGTTATTTTAGAAGAAGGAGAGCTAAAGGATGACGGCGAAGACGCAGAAATGCAGGT
GGACGCTCCTTCAGACTCCAGCGTCATAGCCCAGCAGAAGGCCATGAAGAGTCTGTTCGG
AGATGATGAGAAAGAAACAGGTGAAGAAAGTGAGATCATTCCTACACTGGAACCCTTACC
ACCTCATGAGGTTCCTGGACATCAGTCAGTTTTTATGAACGAACCAAGACTCTCTGACTT
CAAACAAGTTCTTTTACGAGAGGGGATCCAAGCTGAATTTGTAGGCGGTGTCCTCGTTTG
CAACAATCAAGTGGCAGTCCGTAGAACGGAAACTGGACGCATTGGATTAGAAGGCTGCCT
TTGTCAAGATTTTTATAGGATAAGAGACCTTTTATATGAACAGTATGCCATTGTGTAAAG
GACATGATGTCAAGAAGTATCTGTTTGACCTTTCTAAGAAAAAAGGATCTAAGAAAAAAG
AACTCTTACTCTAAGCTTTTGCTTTTTTGTTTTGTAACATACAAAAAGAATCTGCCAGAA
AAACTTAACATGCATTAGATTTTTAAAAGTGTAAGTGGAAACCATATCATTGCTAATGCT
CCAGTGAGCATGCGACCTTTTGGCTTTCGGCGTGATAGAGATCCTTACAAGTGTGCAGCC
CTGGCTGAAGGTGACTGGCTTCCTTTTCACACCCCTTATTCTAGAAGGGCTTTTTACTTG
AATAAAACAGTGCAACTTAGCAAACCAGTTCATGGCCTTCAAGAAACATGTTTGCATGAA
TTCTTGTAAACGGTTTCTTCCATATTCTGGAATGAAAAGTGAGACTTTACTTAGAAAGGA
TGTGCTGTAAAAAACCTGATAAAACAGCTTTTTGAGGCTTATCTCTTTCAAAAACAAAAA
AACCCAGTATACGTGCTCTAGTTCTTTGGAATTCCTCTATGCAGTTTTCTTCACATTCAG
CTTCGCTCTTCATGACTGCGTTTCACGGTGGTTTTACTCTGCTGTGAGATAGTACACATC
TGGTTCAGAAATCAGTTTTTATTTCTCCCATTTCTTGTTCCATTAAGATCTTGTTGTTGT
TGAGCTTAAGTTATAACACCACAAAGTTATAAAAGTTATAAAAGTTCAAAAGTTATAACA
TTTGAATATACGTCATTCAAAAAAAAACCTCCTTGATGTGTTCTAGTCTTAAGGGTTCTG
CATGCATTTTAGACACATCTTAACCATCAGCTGGGATGCTGTGTTGGAGACGGTTTAGTG
TTTTGCTTTTAGGGAAATAAATGTTGAACTTCATATTTTTTAATAAGGTAATAGTATAAT
GAAAAGGTGTAAATGTTTTCATCTCTTAGGCATGCTCTCTCCCAAGGTTGCCCAAGCAGT
GGTTGGTTTTTATACATATTACTTCAGAAATTATATGGAAGTTGAGAC
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
9-312, gnl|bosTau2|chr21 (36615893-36616196) |
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9-312, gnl|canFam2|chr8 (4391583-4391853) |
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9-312, gnl|danRer3|chr14 (15365804-15365513) |
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9-312, gnl|dasNov1|scaffold_11863 (30499-30769) |
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9-312, gnl|echTel1|scaffold_314165 (41001-41278) |
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9-312, gnl|fr1|chrUn (183955264-183955549) |
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9-312, gnl|galGal2|chr5 (41400035-41400305) |
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9-312, gnl|hg17|chr14 (91695079-91695349) |
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9-312, gnl|Hg17|chr14 (91695078-91695381) |
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9-312, gnl|mm7|chr12 (99496027-99496297) |
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9-312, gnl|Mm7|chr12 (99496026-99496329) |
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9-312, gnl|monDom2|scaffold_8 (30009370-30009640) |
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9-312, gnl|oryCun1|scaffold_205225 (75030-75300) |
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9-312, gnl|panTro1|chr15 (92074979-92075249) |
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9-312, gnl|rheMac2|chr7 (155362348-155362618) |
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9-312, gnl|rn3|chr6 (126273644-126273914) |
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9-312, gnl|tetNig1|chr14 (2551932-2551647) |
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9-312, gnl|xenTro1|scaffold_22 (2847415-2847688) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
9-312, gnl|bosTau2|chr21 (36615893-36616196) |
|
9-312, gnl|canFam2|chr8 (4391583-4391853) |
|
9-312, gnl|danRer3|chr14 (15365804-15365513) |
|
9-312, gnl|dasNov1|scaffold_11863 (30499-30769) |
|
9-312, gnl|echTel1|scaffold_314165 (41001-41278) |
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9-312, gnl|fr1|chrUn (183955264-183955549) |
|
9-312, gnl|galGal2|chr5 (41400035-41400305) |
|
9-312, gnl|hg17|chr14 (91695079-91695349) |
|
9-312, gnl|Hg17|chr14 (91695078-91695381) |
|
9-312, gnl|mm7|chr12 (99496027-99496297) |
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9-312, gnl|Mm7|chr12 (99496026-99496329) |
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9-312, gnl|monDom2|scaffold_8 (30009370-30009640) |
|
9-312, gnl|oryCun1|scaffold_205225 (75030-75300) |
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9-312, gnl|panTro1|chr15 (92074979-92075249) |
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9-312, gnl|rheMac2|chr7 (155362348-155362618) |
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9-312, gnl|rn3|chr6 (126273644-126273914) |
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9-312, gnl|tetNig1|chr14 (2551932-2551647) |
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9-312, gnl|xenTro1|scaffold_22 (2847415-2847688) |
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fbs (0.350693) |
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tbr (0.308356) |
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ski (0.29347) |
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cbe (0.239234) |
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pan (0.23596) |
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fhi (0.169578) |
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lin (0.145603) |
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lnt (0.142308) |
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pla (0.133672) |
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lyg (0.133103) |
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bla (0.124347) |
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spc (0.113366) |
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fbs (0.350693) |
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tbr (0.308356) |
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ski (0.29347) |
|
cbe (0.239234) |
|
pan (0.23596) |
|
fhi (0.169578) |
|
lin (0.145603) |
|
lnt (0.142308) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
bla (0.124347) |
|
spc (0.113366) |
