Ss1.1-rlyg23_m6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGATGCTCACTGAAAGTTGTAAGCTACGAGGTCTTCATCACAGAAATCTTCTCCCTATT ACCCATGTGTGTATAGAAGAAGGAGAAAAGCCCATGGTGATATTGCCTTACATGAATTGG GGGAATCTTAAATTGTTTTTACGCCAGTGCAAATTAGTAGAAGCCAATAATCCACAGGCA ATTTCTCAACAAGACCTGGTCCACATGGCTATTCAGATTGCCTGTGGAATGAGCTATCTG GCCAGAAGGGAAGTCATCCACAAAGACCTGGCTGCTAGGAACTGTGTCATTGATGACACA CTTCAAGTTAAGATCACAGACAATGCCCTCTCCAGAGACTTGTTCCCCATGGACTATCAT TGTCTGGGGGACAATGAAAACAGGCCGGTTCGGTGGATGGCTCTTGAAAGTCTGGTTAAT AATGAGTTCTCCAGTGCTAGTGATGTGTGGGCCTTCGGAGTGACACTGTGGGAGCTCATG ACTCTAGGGCAAACACCCTACGTGGACATCGACCCGTTTGAGATGGCCGCGTACCTGAAA GATGGTTACCGAATAGCCCAGCCAATCAACTGTCCTGATGAACTATTTGCGGTGATGGCT TGTTGTTGGGCCTTAGATCCAGAGGAGCGGCCCAAGTTCCAGCAGCTGGTACAGTGTCTC ACAGAGTTCCATGCCGCCCTGGGGGCCTATGTCTGACTCTACACTCACAGCCCTGCAGCA TCAGGAGGAAGGTGCCTGTCACGGATGCTTCATACACCATGCAGCACCAGCGGAAGCACA TTTGTCTTCCAGAACATCGTGCCTTAGGAACGCTTTTAGAATCTGAACTTTTTAAGACAG ACCTAATGATGTGGAATATTTTATAGATATCACTTTTATTAGTTAAACTGAAAAGGTTTT TGTAAATTTTTTGGCCAAAAATTTTTTAAACATAGTTAACTTTGGACTAGGGGTACATTC TTACAGAATAAATAAACAGTTTTTAAAATTGTTTAAACACAGATATTTGGAATAGCTTAT CTTAGTGCCATCTGCTTTTTATTTTTTGACTTCATCAAGGTAATGTAGGTGACTCACCTT TAAAGTTTTAAAAATATTTATCACTAGTCTTGGGAATGGTTTGTCTTCAAGATATAGTAC TTTTTCTTAGGAAAAGAAAAATAGAAAAAGATGTCAGTTTGCCTTGAACAGGAAAAGGCA GTATTGGAGGAAGAAAACTTAAAGAAAAGCTAGAGGGAGAAAGAGAAAAATACTTACTAG AAACCGAAACTATGCTTTTGTGGAAAATTGTGTGGTTTTTTGTTTTTTGTTTTTGTTTTT GTTTTTAATGAAAAGGTGTTCTACTTTCCTATTTGGGGGGAAGTAGGGACTGAGTTCTTT GAAGTATCCTAAATTTGGCAGAAACTGACATTTCTGTGAGCCGCAAGTGATTTGGGGCAG GTCAGTAGTAAACAATGGTAGTTTTATTTATTTTTACTCTCTGGAAAAGGAGATAACAGA ATTCCAGAAAGTGAAATCCTGTTTCTAAGACTAAGAATCGCTTTTATTGCACCTAGAATA GTGCTATGCACAGAATGGGTGCTTGAGTTGTTGTGAGTAAAAAATGTAAACTGGTAAATT TTGTACTATCTTCAAGGCTGGCTTAAGTATAAAATTGTTTTTTTTTTAACACTTGAAAAA TTAAAGAATTTGTTTTATATTATGACAGTATTGAAAATATTGCTCATAATGAATGAATGA TTGTGGCTGATAAGTCTTTGAACACCCAACAGCTGGACATCCCTGTTTCACTTCATAGGT GTCTCACTCAGGCTCCCAAGCCCTAATCCAGATACAGCTGACTCTGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGATGCTCACTGAAAGTTGTAAGCTACGAGGTCTTCATCACAGAAATCTTCTCCCTATT ACCCATGTGTGTATAGAAGAAGGAGAAAAGCCCATGGTGATATTGCCTTACATGAATTGG GGGAATCTTAAATTGTTTTTACGCCAGTGCAAATTAGTAGAAGCCAATAATCCACAGGCA ATTTCTCAACAAGACCTGGTCCACATGGCTATTCAGATTGCCTGTGGAATGAGCTATCTG GCCAGAAGGGAAGTCATCCACAAAGACCTGGCTGCTAGGAACTGTGTCATTGATGACACA CTTCAAGTTAAGATCACAGACAATGCCCTCTCCAGAGACTTGTTCCCCATGGACTATCAT TGTCTGGGGGACAATGAAAACAGGCCGGTTCGGTGGATGGCTCTTGAAAGTCTGGTTAAT AATGAGTTCTCCAGTGCTAGTGATGTGTGGGCCTTCGGAGTGACACTGTGGGAGCTCATG ACTCTAGGGCAAACACCCTACGTGGACATCGACCCGTTTGAGATGGCCGCGTACCTGAAA GATGGTTACCGAATAGCCCAGCCAATCAACTGTCCTGATGAACTATTTGCGGTGATGGCT TGTTGTTGGGCCTTAGATCCAGAGGAGCGGCCCAAGTTCCAGCAGCTGGTACAGTGTCTC ACAGAGTTCCATGCCGCCCTGGGGGCCTATGTCTGACTCTACACTCACAGCCCTGCAGCA TCAGGAGGAAGGTGCCTGTCACGGATGCTTCATACACCATGCAGCACCAGCGGAAGCACA TTTGTCTTCCAGAACATCGTGCCTTAGGAACGCTTTTAGAATCTGAACTTTTTAAGACAG ACCTAATGATGTGGAATATTTTATAGATATCACTTTTATTAGTTAAACTGAAAAGGTTTT TGTAAATTTTTTGGCCAAAAATTTTTTAAACATAGTTAACTTTGGACTAGGGGTACATTC TTACAGAATAAATAAACAGTTTTTAAAATTGTTTAAACACAGATATTTGGAATAGCTTAT CTTAGTGCCATCTGCTTTTTATTTTTTGACTTCATCAAGGTAATGTAGGTGACTCACCTT TAAAGTTTTAAAAATATTTATCACTAGTCTTGGGAATGGTTTGTCTTCAAGATATAGTAC TTTTTCTTAGGAAAAGAAAAATAGAAAAAGATGTCAGTTTGCCTTGAACAGGAAAAGGCA GTATTGGAGGAAGAAAACTTAAAGAAAAGCTAGAGGGAGAAAGAGAAAAATACTTACTAG AAACCGAAACTATGCTTTTGTGGAAAATTGTGTGGTTTTTTGTTTTTTGTTTTTGTTTTT GTTTTTAATGAAAAGGTGTTCTACTTTCCTATTTGGGGGGAAGTAGGGACTGAGTTCTTT GAAGTATCCTAAATTTGGCAGAAACTGACATTTCTGTGAGCCGCAAGTGATTTGGGGCAG GTCAGTAGTAAACAATGGTAGTTTTATTTATTTTTACTCTCTGGAAAAGGAGATAACAGA ATTCCAGAAAGTGAAATCCTGTTTCTAAGACTAAGAATCGCTTTTATTGCACCTAGAATA GTGCTATGCACAGAATGGGTGCTTGAGTTGTTGTGAGTAAAAAATGTAAACTGGTAAATT TTGTACTATCTTCAAGGCTGGCTTAAGTATAAAATTGTTTTTTTTTTAACACTTGAAAAA TTAAAGAATTTGTTTTATATTATGACAGTATTGAAAATATTGCTCATAATGAATGAATGA TTGTGGCTGATAAGTCTTTGAACACCCAACAGCTGGACATCCCTGTTTCACTTCATAGGT GTCTCACTCAGGCTCCCAAGCCCTAATCCAGATACAGCTGACTCTGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1037-1143, - strand, RNAz p=0.815494 | |
| 1253-1450, - strand, RNAz p=0.999991 | |
| 1491-1598, - strand, RNAz p=0.768744 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1037-1143, - strand, RNAz p=0.815494 | |
| 1253-1450, - strand, RNAz p=0.999991 | |
| 1491-1598, - strand, RNAz p=0.768744 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 43-178, gnl|bosTau2|chr1 (87878697-87878562) | |
| 43-178, gnl|canFam2|chr23 (34040045-34040185) | |
| 43-178, gnl|danRer3|chr6 (13064285-13064425) | |
| 43-178, gnl|dasNov1|scaffold_20874 (45768-45628) | |
| 43-178, gnl|fr1|chrUn (285155339-285155199) | |
| 43-178, gnl|galGal2|chr9 (9080930-9081070) | |
| 43-178, gnl|hg17|chr3 (135379478-135379618) | |
| 43-178, gnl|Hg17|chr3 (135379617-135379482) | |
| 43-178, gnl|loxAfr1|scaffold_23404 (43963-43840) | |
| 43-178, gnl|mm7|chr9 (102608807-102608667) | |
| 43-178, gnl|Mm7|chr9 (102608666-102608801) | |
| 43-178, gnl|monDom2|scaffold_24 (27792128-27792268) | |
| 43-178, gnl|oryCun1|scaffold_121894 (24496-24636) | |
| 43-178, gnl|panTro1|chr2 (137565794-137565934) | |
| 43-178, gnl|rheMac2|chr2 (153573812-153573672) | |
| 43-178, gnl|rn3|chr8 (107903995-107903855) | |
| 43-178, gnl|tetNig1|chrUn_random (50198569-50198709) | |
| 43-178, gnl|xenTro1|scaffold_346 (1081561-1081699) | |
| 288-447, gnl|bosTau2|chr1 (87877407-87877248) | |
| 288-447, gnl|Hg17|chr3 (135377310-135377151) | |
| 288-447, gnl|Mm7|chr9 (102610157-102610316) | |
| 585-1819, gnl|bosTau2|chr1 (87844491-87843238) | |
| 585-1819, gnl|Hg17|chr3 (135359806-135358556) | |
| 585-1819, gnl|Mm7|chr9 (102618222-102619417) | |
| 1443-1705, gnl|bosTau2|chr12 (29341425-29341163) | |
| 1443-1705, gnl|Hg17|chr3 (135358942-135358715) | |
| 1443-1705, gnl|Mm7|chr9 (102619037-102619307) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 43-178, gnl|bosTau2|chr1 (87878697-87878562) | |
| 43-178, gnl|canFam2|chr23 (34040045-34040185) | |
| 43-178, gnl|danRer3|chr6 (13064285-13064425) | |
| 43-178, gnl|dasNov1|scaffold_20874 (45768-45628) | |
| 43-178, gnl|fr1|chrUn (285155339-285155199) | |
| 43-178, gnl|galGal2|chr9 (9080930-9081070) | |
| 43-178, gnl|hg17|chr3 (135379478-135379618) | |
| 43-178, gnl|Hg17|chr3 (135379617-135379482) | |
| 43-178, gnl|loxAfr1|scaffold_23404 (43963-43840) | |
| 43-178, gnl|mm7|chr9 (102608807-102608667) | |
| 43-178, gnl|Mm7|chr9 (102608666-102608801) | |
| 43-178, gnl|monDom2|scaffold_24 (27792128-27792268) | |
| 43-178, gnl|oryCun1|scaffold_121894 (24496-24636) | |
| 43-178, gnl|panTro1|chr2 (137565794-137565934) | |
| 43-178, gnl|rheMac2|chr2 (153573812-153573672) | |
| 43-178, gnl|rn3|chr8 (107903995-107903855) | |
| 43-178, gnl|tetNig1|chrUn_random (50198569-50198709) | |
| 43-178, gnl|xenTro1|scaffold_346 (1081561-1081699) | |
| 288-447, gnl|bosTau2|chr1 (87877407-87877248) | |
| 288-447, gnl|Hg17|chr3 (135377310-135377151) | |
| 288-447, gnl|Mm7|chr9 (102610157-102610316) | |
| 585-1819, gnl|bosTau2|chr1 (87844491-87843238) | |
| 585-1819, gnl|Hg17|chr3 (135359806-135358556) | |
| 585-1819, gnl|Mm7|chr9 (102618222-102619417) | |
| 1443-1705, gnl|bosTau2|chr12 (29341425-29341163) | |
| 1443-1705, gnl|Hg17|chr3 (135358942-135358715) | |
| 1443-1705, gnl|Mm7|chr9 (102619037-102619307) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| tbr (0.462535) | |
| che (0.408942) | |
| lyg (0.399308) | |
| sug (0.381874) | |
| gul (0.355177) | |
| mga (0.32041) | |
| liv (0.292569) | |
| nca (0.273748) | |
| ova (0.258264) | |
| bla (0.248694) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ret (0.128733) | |
| thg (0.126791) | |
| eep (0.122564) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| eje (0.0988338) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (0.462535) | |
| che (0.408942) | |
| lyg (0.399308) | |
| sug (0.381874) | |
| gul (0.355177) | |
| mga (0.32041) | |
| liv (0.292569) | |
| nca (0.273748) | |
| ova (0.258264) | |
| bla (0.248694) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ret (0.128733) | |
| thg (0.126791) | |
| eep (0.122564) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| eje (0.0988338) |