Non-Coding RNA Search

Ss1.1-rlyg23_n14.5

Sequence:


               
               AATGGAAGTTGAGTTTTTCTCTTTGTTAGTCCTCTAACCATATATCATCATACTTAATAT
TTCATTTGCCTTATACTTTGAATGCCGCTGTAAATTTTTTTTTTTTTTTTTTTTTGGTTG
GTCGTAAGCCTTTTCTTGGTCTAGGTAGTTGGTTTGGGACACTTTAGAGGCCCCTGCTGC
TTATTTATTCCCATTCTTGTCCATGTGTTCCTCTTTCCATCAACTGTGTGTGTCTGTACA
CTTTTGTCTGAGAGATCAGCAATCTCCCTCTTTAGCTACATTGATTTAATTTTGTTTTTT
TCTTAAGATAATAATCATACTACCTGGATTTTAATGTTTCAGAATTCCCTAAGCCTTAAT
TCTCTCCCCTTTTTGGACCTTCTACTGAATTTTTAAGTCTTTCTTTCCTCAATTAAAAGA
AATCAGAAGATAAAAGTAATGAAATTTGTTATATTTATGTATATATTTCTGATTGTTGTT
GTTCTTTTTAGCATTACAGTAAACCCTAAGTGATGATTCCTTTGACAAATCCTAAAGATA
AATTTTTTCCCACATTAATTCATTTGCTTGCTGAGCAGATATTTATGGAGTACCTATGAG
GTGCTGGGGAAAATGCAGAGAATGATATGATCAAAATCTCTGCCTTCAGGGATGTAATGT
ACAGCATGGACTATGGTTAACAATACCGTGTTGCATATTTGGAAACTGCTAAGAGAGTAA
ATCTTAAAAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGGAAGTTGAGTTTTTCTCTTTGTTAGTCCTCTAACCATATATCATCATACTTAATAT
TTCATTTGCCTTATACTTTGAATGCCGCTGTAAATTTTTTTTTTTTTTTTTTTTTGGTTG
GTCGTAAGCCTTTTCTTGGTCTAGGTAGTTGGTTTGGGACACTTTAGAGGCCCCTGCTGC
TTATTTATTCCCATTCTTGTCCATGTGTTCCTCTTTCCATCAACTGTGTGTGTCTGTACA
CTTTTGTCTGAGAGATCAGCAATCTCCCTCTTTAGCTACATTGATTTAATTTTGTTTTTT
TCTTAAGATAATAATCATACTACCTGGATTTTAATGTTTCAGAATTCCCTAAGCCTTAAT
TCTCTCCCCTTTTTGGACCTTCTACTGAATTTTTAAGTCTTTCTTTCCTCAATTAAAAGA
AATCAGAAGATAAAAGTAATGAAATTTGTTATATTTATGTATATATTTCTGATTGTTGTT
GTTCTTTTTAGCATTACAGTAAACCCTAAGTGATGATTCCTTTGACAAATCCTAAAGATA
AATTTTTTCCCACATTAATTCATTTGCTTGCTGAGCAGATATTTATGGAGTACCTATGAG
GTGCTGGGGAAAATGCAGAGAATGATATGATCAAAATCTCTGCCTTCAGGGATGTAATGT
ACAGCATGGACTATGGTTAACAATACCGTGTTGCATATTTGGAAACTGCTAAGAGAGTAA
ATCTTAAAAGTT

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               2-732, gnl|bosTau2|chr15 (38635598-38634868)
               

               
               2-732, gnl|canFam2|chr18 (36991907-36990960)
               

               
               2-732, gnl|dasNov1|scaffold_37629 (1423-523)
               

               
               2-732, gnl|hg17|chr11 (33722073-33722935)
               

               
               2-732, gnl|mm7|chr2 (103909056-103908300)
               

               
               2-732, gnl|oryCun1|scaffold_83660 (3281-2420)
               

               
               2-732, gnl|panTro1|chr9 (34106255-34107117)
               

               
               2-732, gnl|rheMac2|chr14 (38090149-38089291)
               

               
               2-732, gnl|rn3|chr3 (89347096-89347895)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-732, gnl|bosTau2|chr15 (38635598-38634868)
               

               
               2-732, gnl|canFam2|chr18 (36991907-36990960)
               

               
               2-732, gnl|dasNov1|scaffold_37629 (1423-523)
               

               
               2-732, gnl|hg17|chr11 (33722073-33722935)
               

               
               2-732, gnl|mm7|chr2 (103909056-103908300)
               

               
               2-732, gnl|oryCun1|scaffold_83660 (3281-2420)
               

               
               2-732, gnl|panTro1|chr9 (34106255-34107117)
               

               
               2-732, gnl|rheMac2|chr14 (38090149-38089291)
               

               
               2-732, gnl|rn3|chr3 (89347096-89347895)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               lyg (0.266205)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.266205)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)

	2-732, gnl\|bosTau2\|chr15 (38635598-38634868)
	2-732, gnl\|canFam2\|chr18 (36991907-36990960)
	2-732, gnl\|dasNov1\|scaffold_37629 (1423-523)
	2-732, gnl\|hg17\|chr11 (33722073-33722935)
	2-732, gnl\|mm7\|chr2 (103909056-103908300)
	2-732, gnl\|oryCun1\|scaffold_83660 (3281-2420)
	2-732, gnl\|panTro1\|chr9 (34106255-34107117)
	2-732, gnl\|rheMac2\|chr14 (38090149-38089291)
	2-732, gnl\|rn3\|chr3 (89347096-89347895)