Non-Coding RNA Search

Ss1.1-rlyg23_o9.5

Sequence:


               
               CTGGAGTTCCCAGTCTGATGAGAAAATAGACTATAAACCAAATGGAACAAAACACCAGTC
CAATATTTTGGTGGAGACTTTAAAAGCATACTGTAAAGGGACTCTCTTGCCATGCGAAAA
ACTGACATAAGGTACATAATTATTCTTTATCAGATGTTTTTAGGTGGTATTAGGAGTCTT
TAAAAAAAATATCAAACATTTGTATGGAAACACAACTAAATGTTATTTTCTTTATCTAAA
TTAAGAAATCTCTTGTTAGTATGCTATTTATAATTTTCTGGTTCTTGTATTTTTTAAAAA
AATCTAATATTAATAGTATCAAAGTTTTCTTTTTTTTTCTTTTCTCCCCTAGGTCTTTTC
CTAGCAAAGGTGAATTCACATGGAATAAATTTTAAAAGATAAAGACAAAGCCCAAATACA
GTTTGCTATTCAAAGCACATTATGATTTAAAGCTACTTTTAAAAATAAGAGAAGGAAATT
GGGATGGGATATGGGATTGAGATTGTCTGGTATTTGAACATTATCATTATTGGTTAATGT
TGACATATTTCCTCTGTTTCTTAGGGAGTAAAATTGTTATCTTTAAACTGGCAAATGCAC
TCTTCAGAGATCCTTTTCTGTCCCATCCACATGGAGAGGTTAAAGGTTCAATCTCATGGC
CTCCAAGCAGGCAGTGTTCTCTCTCATAGGTTGCAAGGGTATCACCTGCAAGGATAGAAT
GCAGTTGTACAACAGACACAGTCTTATTCCTCTTGTTTTTTTTTTCCCCACTTCTAATGA
CCCTCTTATTAAATATTGGGCTGAAATATAAATTTAAAAACACATTGAAAAGGATGTACA
ACTGAAGGCTGTGTATGTATATACAGTATGTCAAAAAGCCTTTATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGAGTTCCCAGTCTGATGAGAAAATAGACTATAAACCAAATGGAACAAAACACCAGTC
CAATATTTTGGTGGAGACTTTAAAAGCATACTGTAAAGGGACTCTCTTGCCATGCGAAAA
ACTGACATAAGGTACATAATTATTCTTTATCAGATGTTTTTAGGTGGTATTAGGAGTCTT
TAAAAAAAATATCAAACATTTGTATGGAAACACAACTAAATGTTATTTTCTTTATCTAAA
TTAAGAAATCTCTTGTTAGTATGCTATTTATAATTTTCTGGTTCTTGTATTTTTTAAAAA
AATCTAATATTAATAGTATCAAAGTTTTCTTTTTTTTTCTTTTCTCCCCTAGGTCTTTTC
CTAGCAAAGGTGAATTCACATGGAATAAATTTTAAAAGATAAAGACAAAGCCCAAATACA
GTTTGCTATTCAAAGCACATTATGATTTAAAGCTACTTTTAAAAATAAGAGAAGGAAATT
GGGATGGGATATGGGATTGAGATTGTCTGGTATTTGAACATTATCATTATTGGTTAATGT
TGACATATTTCCTCTGTTTCTTAGGGAGTAAAATTGTTATCTTTAAACTGGCAAATGCAC
TCTTCAGAGATCCTTTTCTGTCCCATCCACATGGAGAGGTTAAAGGTTCAATCTCATGGC
CTCCAAGCAGGCAGTGTTCTCTCTCATAGGTTGCAAGGGTATCACCTGCAAGGATAGAAT
GCAGTTGTACAACAGACACAGTCTTATTCCTCTTGTTTTTTTTTTCCCCACTTCTAATGA
CCCTCTTATTAAATATTGGGCTGAAATATAAATTTAAAAACACATTGAAAAGGATGTACA
ACTGAAGGCTGTGTATGTATATACAGTATGTCAAAAAGCCTTTATTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               613-728, - strand, RNAz p=0.800468

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               613-728, - strand, RNAz p=0.800468

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-888, gnl|bosTau2|chr21 (31625839-31626715)
               

               
               1-888, gnl|canFam2|chr8 (18245540-18246120)
               

               
               1-888, gnl|dasNov1|scaffold_40844 (639-1213)
               

               
               1-888, gnl|echTel1|scaffold_323880 (51730-51181)
               

               
               1-888, gnl|hg17|chr14 (36217387-36217928)
               

               
               1-888, gnl|Hg17|chr14 (36217427-36218278)
               

               
               1-888, gnl|loxAfr1|scaffold_15194 (17584-18153)
               

               
               1-888, gnl|mm7|chr12 (54642291-54642811)
               

               
               1-888, gnl|Mm7|chr12 (54642332-54643136)
               

               
               1-888, gnl|monDom2|scaffold_73 (295900-295349)
               

               
               1-888, gnl|oryCun1|scaffold_205839 (37674-38242)
               

               
               1-888, gnl|panTro1|chr15 (35539949-35540493)
               

               
               1-888, gnl|rheMac2|chr7 (99635608-99636149)
               

               
               1-888, gnl|rn3|chr6 (77126760-77127280)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-888, gnl|bosTau2|chr21 (31625839-31626715)
               

               
               1-888, gnl|canFam2|chr8 (18245540-18246120)
               

               
               1-888, gnl|dasNov1|scaffold_40844 (639-1213)
               

               
               1-888, gnl|echTel1|scaffold_323880 (51730-51181)
               

               
               1-888, gnl|hg17|chr14 (36217387-36217928)
               

               
               1-888, gnl|Hg17|chr14 (36217427-36218278)
               

               
               1-888, gnl|loxAfr1|scaffold_15194 (17584-18153)
               

               
               1-888, gnl|mm7|chr12 (54642291-54642811)
               

               
               1-888, gnl|Mm7|chr12 (54642332-54643136)
               

               
               1-888, gnl|monDom2|scaffold_73 (295900-295349)
               

               
               1-888, gnl|oryCun1|scaffold_205839 (37674-38242)
               

               
               1-888, gnl|panTro1|chr15 (35539949-35540493)
               

               
               1-888, gnl|rheMac2|chr7 (99635608-99636149)
               

               
               1-888, gnl|rn3|chr6 (77126760-77127280)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               sag (0.36543)
               

               
               tra (0.246184)
               

               
               ton (0.1755)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.36543)
               

               
               tra (0.246184)
               

               
               ton (0.1755)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)

	1-888, gnl\|bosTau2\|chr21 (31625839-31626715)
	1-888, gnl\|canFam2\|chr8 (18245540-18246120)
	1-888, gnl\|dasNov1\|scaffold_40844 (639-1213)
	1-888, gnl\|echTel1\|scaffold_323880 (51730-51181)
	1-888, gnl\|hg17\|chr14 (36217387-36217928)
	1-888, gnl\|Hg17\|chr14 (36217427-36218278)
	1-888, gnl\|loxAfr1\|scaffold_15194 (17584-18153)
	1-888, gnl\|mm7\|chr12 (54642291-54642811)
	1-888, gnl\|Mm7\|chr12 (54642332-54643136)
	1-888, gnl\|monDom2\|scaffold_73 (295900-295349)
	1-888, gnl\|oryCun1\|scaffold_205839 (37674-38242)
	1-888, gnl\|panTro1\|chr15 (35539949-35540493)
	1-888, gnl\|rheMac2\|chr7 (99635608-99636149)
	1-888, gnl\|rn3\|chr6 (77126760-77127280)

	sag (0.36543)
	tra (0.246184)
	ton (0.1755)
	lyg (0.133103)
	sug (0.127291)