Non-Coding RNA Search

Ss1.1-rlyg25_f15.5

Sequence:


               
               TGCAAAAGCTCTCTGAACAGTGGAAAGCTATTCAAATAAAAGGGATAACTTATGTGGATG
ATTAAAAACATGTTTATGGGTAGAAAAGTTATTCCACTTTTAAAATCAATAGCCAATTCT
CATTCTTGCTATTTTATTATTGAGTGAAATATTAGGAAACTAATCTTGGCCAAGTTTATA
TCAAAAATATATCTGTTTGTACCCCTCTTTTTTGTTTAAGCATGCTTGCATTTTAAAAGA
ACATTGTTGTAGAAGTCTTTATGCACCAAATTCACTGAAAGCAAAGTACTGTTCTGTAAC
ATAGCTTGAAACAATCTGCTGAATGTAATAACCAACTTTCGTCTTATCATTAAAAAAAGT
CACTTACCACTGATAACCTGGAAGGCAGAGTAAATGGCTGGTGTCTTTGGATTACACCAT
GGAAGTTTTAGTGACATCCAGGCATGCTGCTGAAACTGATGCATTTGAAAGAGCTGTAGA
AATAATGCAAAACTTTGGTTTCAAAAAATCTACTCATGTTTTAAAAGTATTTAACTCTGT
AGAACCACAGTTAGGAAATCTCAGTAATGCTGCTAATGATATTTGTAAAATAAATCTTCA
ATGTAGTGTAATATTTCTATATTTACTGGGAGAGACAATAGAAGCATCACAGTTGTACTC
TAGTGCAAAGAGGGAGAAATTCCAAATAGCCTAGGGAATAGTAAGGTATAAGGCTTCAAT
GAAAAGTTGTATTAGATCACATTCCTGATGTAATCTTTCTGCCATGCTATGTTATCAATA
GCTAAAAAATAACAATAAAAAAACTACCATGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAAAAGCTCTCTGAACAGTGGAAAGCTATTCAAATAAAAGGGATAACTTATGTGGATG
ATTAAAAACATGTTTATGGGTAGAAAAGTTATTCCACTTTTAAAATCAATAGCCAATTCT
CATTCTTGCTATTTTATTATTGAGTGAAATATTAGGAAACTAATCTTGGCCAAGTTTATA
TCAAAAATATATCTGTTTGTACCCCTCTTTTTTGTTTAAGCATGCTTGCATTTTAAAAGA
ACATTGTTGTAGAAGTCTTTATGCACCAAATTCACTGAAAGCAAAGTACTGTTCTGTAAC
ATAGCTTGAAACAATCTGCTGAATGTAATAACCAACTTTCGTCTTATCATTAAAAAAAGT
CACTTACCACTGATAACCTGGAAGGCAGAGTAAATGGCTGGTGTCTTTGGATTACACCAT
GGAAGTTTTAGTGACATCCAGGCATGCTGCTGAAACTGATGCATTTGAAAGAGCTGTAGA
AATAATGCAAAACTTTGGTTTCAAAAAATCTACTCATGTTTTAAAAGTATTTAACTCTGT
AGAACCACAGTTAGGAAATCTCAGTAATGCTGCTAATGATATTTGTAAAATAAATCTTCA
ATGTAGTGTAATATTTCTATATTTACTGGGAGAGACAATAGAAGCATCACAGTTGTACTC
TAGTGCAAAGAGGGAGAAATTCCAAATAGCCTAGGGAATAGTAAGGTATAAGGCTTCAAT
GAAAAGTTGTATTAGATCACATTCCTGATGTAATCTTTCTGCCATGCTATGTTATCAATA
GCTAAAAAATAACAATAAAAAAACTACCATGAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               517-821, gnl|bosTau2|chr17 (462365-462679)
               

               
               517-821, gnl|Hg17|chr10 (119030295-119029990)
               

               
               517-821, gnl|Mm7|chr19 (59219670-59219392)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               517-821, gnl|bosTau2|chr17 (462365-462679)
               

               
               517-821, gnl|Hg17|chr10 (119030295-119029990)
               

               
               517-821, gnl|Mm7|chr19 (59219670-59219392)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               lin (0.291206)
               

               
               lyg (0.266205)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               lyg (0.266205)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	517-821, gnl\|bosTau2\|chr17 (462365-462679)
	517-821, gnl\|Hg17\|chr10 (119030295-119029990)
	517-821, gnl\|Mm7\|chr19 (59219670-59219392)

	lin (0.291206)
	lyg (0.266205)
	sag (0.182715)
	sin (0.174948)
	eye (0.170503)
	bfe (0.149858)
	lnt (0.142308)
	spc (0.113366)
	ldo (0.0970026)