Non-Coding RNA Search

Ss1.1-rlyg25_l8.5

Sequence:


               
               TTCAAAGCACTTGGTAGTTCTCTATTGCCAACAGATTTAATGTTTTATGTGTTGCCAATT
CTTGCAACCACTGCCCTAACAAACCTGTGGGTTGCAAGTAAGAATTACAATTCCAAGCAT
GTTTCAAAGAGGTACATTTTGTTGAGACCCCATCACCTTTCCTTCGTGCCCACTGTGTTT
TTACTTTTTTTGAAGGCACTTTTTCCATCACGTTGTAGATGTCTGTATTCCCATTGGAAA
TGTCTGTTTAGCTTTATAAGACATTTTGCTGAAATACGAAATTGAGCCTTATTGACAATT
AAGTGCTTCTTGCAGCAGGTGGTCAAAGAGTGACTAACACATGACCCGTTAAAGAGTATA
ACCTGTGTCTGGACCATTCCTCAAGTTTTACTTACCAACAAATACCATCATGCCTTGAAT
GTTCATTTCTCCCAAGTGCTATTCCTTAAACATGAGAGTTTACCAGCTGCCTGATTATGC
AATAAAAATTGCTCTGAGATGGCTAACTGCCCGCAACACTGGGGAAACGCAAACTCAAAA
TGCTTATAACTTGGTTCACATGTTTCCATTTGTTGAAAGTCTTACAGATGGGAAGCAGGT
GTCCCTCCTCAATTTTTCCAACATTTTGAAAGGAAGACAATTCTGTTATCCAGATGGGTA
AGCGTCTATATCCTTAAGTTGTGAATCCCTCATAATGAGGGATTTTAAAGTATTTATAAA
GACACTGCCCTCTAAAAATGTCCTCAGATCTCTGAAGAGTAGTCTTGGTCCTGAATATAC
AATGTTATCCTTTGTCTTTTTAAAGGGTGATCCAGACCTGAGAAGCAACTAGTTGGTGCA
TAAGAAGGCCCTACTTGGCTATTTCATATCTACCTACAATTGACCAAATTTTTTTAGGCC
ACCAATTATTATTTAGCTTCGCTCCTTCTAGTGCAAGAAACTGTAGGCCAGATCAGTAGT
TCAACAGCTAAACAGTCATAAAATAGTCACTGTGCATGTCAAAATTTCTTTCAACTATAA
AACCAACTCCAGTTTCTATTTCCTTATTCATTGTGACAGTATTACTCAACAGGTAAGGAT
GGGAATATTTTGTTATCCCGTGTATAGTGAATGTATTGTACTGTGTCTGTGAAAACTGTG
CTTTAAATTATATTTTCATATGTTTTGTTCGGGACAGAGCACATTAAGTTTGAAAGCAAC
AAGAGGTTTGTTTTAGAACTGAAGGCAACTTAATCAAAAATTCCTGTCAAGAAAAGCTGC
TTATAAATGTAAATGAAATCACATTTAAAATAAACTGCCTCTGACCCAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAAAGCACTTGGTAGTTCTCTATTGCCAACAGATTTAATGTTTTATGTGTTGCCAATT
CTTGCAACCACTGCCCTAACAAACCTGTGGGTTGCAAGTAAGAATTACAATTCCAAGCAT
GTTTCAAAGAGGTACATTTTGTTGAGACCCCATCACCTTTCCTTCGTGCCCACTGTGTTT
TTACTTTTTTTGAAGGCACTTTTTCCATCACGTTGTAGATGTCTGTATTCCCATTGGAAA
TGTCTGTTTAGCTTTATAAGACATTTTGCTGAAATACGAAATTGAGCCTTATTGACAATT
AAGTGCTTCTTGCAGCAGGTGGTCAAAGAGTGACTAACACATGACCCGTTAAAGAGTATA
ACCTGTGTCTGGACCATTCCTCAAGTTTTACTTACCAACAAATACCATCATGCCTTGAAT
GTTCATTTCTCCCAAGTGCTATTCCTTAAACATGAGAGTTTACCAGCTGCCTGATTATGC
AATAAAAATTGCTCTGAGATGGCTAACTGCCCGCAACACTGGGGAAACGCAAACTCAAAA
TGCTTATAACTTGGTTCACATGTTTCCATTTGTTGAAAGTCTTACAGATGGGAAGCAGGT
GTCCCTCCTCAATTTTTCCAACATTTTGAAAGGAAGACAATTCTGTTATCCAGATGGGTA
AGCGTCTATATCCTTAAGTTGTGAATCCCTCATAATGAGGGATTTTAAAGTATTTATAAA
GACACTGCCCTCTAAAAATGTCCTCAGATCTCTGAAGAGTAGTCTTGGTCCTGAATATAC
AATGTTATCCTTTGTCTTTTTAAAGGGTGATCCAGACCTGAGAAGCAACTAGTTGGTGCA
TAAGAAGGCCCTACTTGGCTATTTCATATCTACCTACAATTGACCAAATTTTTTTAGGCC
ACCAATTATTATTTAGCTTCGCTCCTTCTAGTGCAAGAAACTGTAGGCCAGATCAGTAGT
TCAACAGCTAAACAGTCATAAAATAGTCACTGTGCATGTCAAAATTTCTTTCAACTATAA
AACCAACTCCAGTTTCTATTTCCTTATTCATTGTGACAGTATTACTCAACAGGTAAGGAT
GGGAATATTTTGTTATCCCGTGTATAGTGAATGTATTGTACTGTGTCTGTGAAAACTGTG
CTTTAAATTATATTTTCATATGTTTTGTTCGGGACAGAGCACATTAAGTTTGAAAGCAAC
AAGAGGTTTGTTTTAGAACTGAAGGCAACTTAATCAAAAATTCCTGTCAAGAAAAGCTGC
TTATAAATGTAAATGAAATCACATTTAAAATAAACTGCCTCTGACCCAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               1-118, - strand, RNAz p=0.796433
               

               
               601-799, - strand, RNAz p=0.995306
               

               
               1189-1315, - strand, RNAz p=0.779972

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.796433
               

               
               601-799, - strand, RNAz p=0.995306
               

               
               1189-1315, - strand, RNAz p=0.779972

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1315, gnl|bosTau2|chr4 (39600031-39601326)
               

               
               1-1315, gnl|Hg17|chr7 (27644748-27643432)
               

               
               1-1315, gnl|Mm7|chr6 (52732693-52731435)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1315, gnl|bosTau2|chr4 (39600031-39601326)
               

               
               1-1315, gnl|Hg17|chr7 (27644748-27643432)
               

               
               1-1315, gnl|Mm7|chr6 (52732693-52731435)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               gul (0.710353)
               

               
               aor (0.585823)
               

               
               amn (0.417711)
               

               
               lyg (0.399308)
               

               
               ova (0.387397)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               thg (0.253582)
               

               
               ebs (0.236602)
               

               
               spc (0.226732)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.710353)
               

               
               aor (0.585823)
               

               
               amn (0.417711)
               

               
               lyg (0.399308)
               

               
               ova (0.387397)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               thg (0.253582)
               

               
               ebs (0.236602)
               

               
               spc (0.226732)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

	1-118, - strand, RNAz p=0.796433
	601-799, - strand, RNAz p=0.995306
	1189-1315, - strand, RNAz p=0.779972

	1-1315, gnl\|bosTau2\|chr4 (39600031-39601326)
	1-1315, gnl\|Hg17\|chr7 (27644748-27643432)
	1-1315, gnl\|Mm7\|chr6 (52732693-52731435)

	gul (0.710353)
	aor (0.585823)
	amn (0.417711)
	lyg (0.399308)
	ova (0.387397)
	fat (0.294855)
	cte (0.29274)
	thg (0.253582)
	ebs (0.236602)
	spc (0.226732)
	fbs (0.175346)
	rec (0.17307)
	bfe (0.149858)
	spl (0.143184)
	nca (0.136874)
	sug (0.127291)
	bla (0.124347)