Non-Coding RNA Search

Ss1.1-rlyg25_o1.5

Sequence:


               
               GACCTGTCCATCTGATTGAGGCCACGCCGTACGGAGCAGCACGAGAAAGGACCTCGAGCT
AGTCCAGCCTCAGCCTCCGCTGGGATCCCCGCTGCCCCATCCAGACACATTTCTGCGATT
TCCTGTAAATGTGTCTAGCTTCGTACCATCTCGTTGTGTATGTTCTAAAGATTAGTTCTT
TCTGTGACTTTTTTAAATACTCTGAGAGTAGTTATAAATCTTGGAGGCTGATGAAAGAAA
CTTGGCGTTTTTAAAGATTAAATCCTCACTTTGATTCCATTATCACTTTGGGGGGACGGG
TAGCTAATAAGTATTTTTATATAATAAAACTAGCTGAACTTTTTCTGACACATCATCAGA
CTTGGGGATTGTTTAGATTATAAATAAGCTGAAATATGGCTCCTAGAACCATAGCAAATC
ACTGAGTCTCTAGTTAGATTTGGTATCCTAAAATTTATCATTCCAAGAATTTTAAAATTG
AATTCCGAATTGTAAAGAGCAGTTAAATATTTTACTATTTCATTAAGGGCTTTTAAAATA
AGTCTGATGGAGGAAGAAAAACAAATTGTATACTTACCATAAAGAGCCACAGATAATTCG
ATTTTCCATGGAATGGGTGGTTCCTGTGTATACCGAAGTTATTGGTGGGAACCCGATAAC
CAGTGAGTAAGTTTTTTAGGTAACCTCTACCCCCACACCTTCCCTCATTAACATTAAATA
GATTGTTTGTACCTTGTTAAATTCTGTTGTTGTCTGCAAAGGAAAACAAAAGGGTTCAAA
TACTCACACCTTCCACACTACAGGTTGCATTTCGATGGAAAACTAGAAAAGACACTAGGT
GAAGAGAAACAGCACCAAGCTTCTAAATGCTTCATACTTTTGCAAAAAGAAGTGTTATAT
GGATTCATCTAAGGGCAGAGTAAACACTATTAGACTTACTGATGACCATTTAAAAATCAC
AAAAAACCCGGAGTTAATAACCCTAAGCGTACATGAATGAGGTCAGTTCACTTAGCAGGA
GCTGTGTGGCTCTTTTCACTCATAGGAGACAAATATGGTTAAAGCACCCAAGAGCAACAG
CCAAAGCCCCCTCTCACCCAGTAGGATGGATTTGTTAAACTTCTGCTGAACAGAATCAGC
CTCCCAAGCAAGATTTTAATCCCGTACTGAATTGTGTATAAAATGCCCTATTATCTCCTG
TAATGTATTGTAAGTAGTCAAATCCTGTATATACTGCTATTTTCGGTGTCTGTTCATTGT
TGTGAACTTATGTATATTAGTGAAATAAATTTCAGCTTTCAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCTGTCCATCTGATTGAGGCCACGCCGTACGGAGCAGCACGAGAAAGGACCTCGAGCT
AGTCCAGCCTCAGCCTCCGCTGGGATCCCCGCTGCCCCATCCAGACACATTTCTGCGATT
TCCTGTAAATGTGTCTAGCTTCGTACCATCTCGTTGTGTATGTTCTAAAGATTAGTTCTT
TCTGTGACTTTTTTAAATACTCTGAGAGTAGTTATAAATCTTGGAGGCTGATGAAAGAAA
CTTGGCGTTTTTAAAGATTAAATCCTCACTTTGATTCCATTATCACTTTGGGGGGACGGG
TAGCTAATAAGTATTTTTATATAATAAAACTAGCTGAACTTTTTCTGACACATCATCAGA
CTTGGGGATTGTTTAGATTATAAATAAGCTGAAATATGGCTCCTAGAACCATAGCAAATC
ACTGAGTCTCTAGTTAGATTTGGTATCCTAAAATTTATCATTCCAAGAATTTTAAAATTG
AATTCCGAATTGTAAAGAGCAGTTAAATATTTTACTATTTCATTAAGGGCTTTTAAAATA
AGTCTGATGGAGGAAGAAAAACAAATTGTATACTTACCATAAAGAGCCACAGATAATTCG
ATTTTCCATGGAATGGGTGGTTCCTGTGTATACCGAAGTTATTGGTGGGAACCCGATAAC
CAGTGAGTAAGTTTTTTAGGTAACCTCTACCCCCACACCTTCCCTCATTAACATTAAATA
GATTGTTTGTACCTTGTTAAATTCTGTTGTTGTCTGCAAAGGAAAACAAAAGGGTTCAAA
TACTCACACCTTCCACACTACAGGTTGCATTTCGATGGAAAACTAGAAAAGACACTAGGT
GAAGAGAAACAGCACCAAGCTTCTAAATGCTTCATACTTTTGCAAAAAGAAGTGTTATAT
GGATTCATCTAAGGGCAGAGTAAACACTATTAGACTTACTGATGACCATTTAAAAATCAC
AAAAAACCCGGAGTTAATAACCCTAAGCGTACATGAATGAGGTCAGTTCACTTAGCAGGA
GCTGTGTGGCTCTTTTCACTCATAGGAGACAAATATGGTTAAAGCACCCAAGAGCAACAG
CCAAAGCCCCCTCTCACCCAGTAGGATGGATTTGTTAAACTTCTGCTGAACAGAATCAGC
CTCCCAAGCAAGATTTTAATCCCGTACTGAATTGTGTATAAAATGCCCTATTATCTCCTG
TAATGTATTGTAAGTAGTCAAATCCTGTATATACTGCTATTTTCGGTGTCTGTTCATTGT
TGTGAACTTATGTATATTAGTGAAATAAATTTCAGCTTTCAAAAAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               11-891, gnl|bosTau2|chr16 (11403423-11404367)
               

               
               11-891, gnl|Hg17|chr1 (216711444-216710483)
               


               
               940-1301, gnl|bosTau2|chr16 (11404463-11404810)
               

               
               940-1301, gnl|Hg17|chr1 (216710403-216710030)
               

               
               940-1301, gnl|Mm7|chr1 (184811647-184812004)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-891, gnl|bosTau2|chr16 (11403423-11404367)
               

               
               11-891, gnl|Hg17|chr1 (216711444-216710483)
               


               
               940-1301, gnl|bosTau2|chr16 (11404463-11404810)
               

               
               940-1301, gnl|Hg17|chr1 (216710403-216710030)
               

               
               940-1301, gnl|Mm7|chr1 (184811647-184812004)

Expressed library(ies): 26 entry(ies)

More info

Expressed library(ies): 26 entry(ies)

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               gul (0.532765)
               

               
               cbe (0.478469)
               

               
               fat (0.442282)
               

               
               mga (0.32041)
               

               
               tbr (0.308356)
               

               
               liv (0.292569)
               

               
               ssp (0.271039)
               

               
               lyg (0.266205)
               

               
               ret (0.257467)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.532765)
               

               
               cbe (0.478469)
               

               
               fat (0.442282)
               

               
               mga (0.32041)
               

               
               tbr (0.308356)
               

               
               liv (0.292569)
               

               
               ssp (0.271039)
               

               
               lyg (0.266205)
               

               
               ret (0.257467)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	11-891, gnl\|bosTau2\|chr16 (11403423-11404367)
	11-891, gnl\|Hg17\|chr1 (216711444-216710483)

	940-1301, gnl\|bosTau2\|chr16 (11404463-11404810)
	940-1301, gnl\|Hg17\|chr1 (216710403-216710030)
	940-1301, gnl\|Mm7\|chr1 (184811647-184812004)

	gul (0.532765)
	cbe (0.478469)
	fat (0.442282)
	mga (0.32041)
	tbr (0.308356)
	liv (0.292569)
	ssp (0.271039)
	lyg (0.266205)
	ret (0.257467)
	spc (0.226732)
	fcc (0.197785)
	aor (0.195274)
	cmu (0.186393)
	rec (0.17307)
	eye (0.170503)
	ski (0.146735)
	lin (0.145603)
	spl (0.143184)
	ova (0.129132)
	ese (0.126502)
	ecc (0.115035)
	cbl (0.114797)
	jca (0.11396)
	cty (0.10408)
	jej (0.0989218)
	ldo (0.0970026)