Non-Coding RNA Search

Ss1.1-rlyg25_p9.5

Sequence:


               
               CTCAAAAGCAAAAAAATAAATACATAAAATAAACTCAACGAGTTCTCTATCTTTACTAAT
GGGGAAAGACTTATTTAACAGGTACATATTTAATACTTTGAATAGCTCATCAACTCAGTC
TTCTTGTACTATAATAAAAATTAAGGAGTTCCCGTCATGGCTCAGTGGTTAACGAATCTG
GGTAGGAACCATGAGGTTGCAGGTTCGATCCCTGGCCTTACCCAGTGGGTTGGGGATCCG
GCGTTGCCGTGAGCTGTGTGGATGCGGCTCGGATCTGGCCTTGCTGTGGCCTTGGCGTAG
GCCAGCAGCTACAGCTCCAGTTGGACCCCTAGCCTGGGAACCTCCATATACCACAGGTGT
GGCCCTAAAAGAACTAAAGACAACAACAAATTAACAGTCTTATATTTCAGCTTTTTTGTC
TTACCATATATATCTAAAGCCCAAATGCTAATGAGCACTAGACATAAAAAAATTAAAGAG
AAGAAGAAATATCTTCTAAAAGAATGGATAAATTGGATTTATTGAATATTTAAGAGCTGG
CTGTATATTCATTGTAAAAAATTAGGCCTAATTTAGAAAACTACTGGCTGGTTGAAATTA
AAATATTTTCCCTTGGCATAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAAAAGCAAAAAAATAAATACATAAAATAAACTCAACGAGTTCTCTATCTTTACTAAT
GGGGAAAGACTTATTTAACAGGTACATATTTAATACTTTGAATAGCTCATCAACTCAGTC
TTCTTGTACTATAATAAAAATTAAGGAGTTCCCGTCATGGCTCAGTGGTTAACGAATCTG
GGTAGGAACCATGAGGTTGCAGGTTCGATCCCTGGCCTTACCCAGTGGGTTGGGGATCCG
GCGTTGCCGTGAGCTGTGTGGATGCGGCTCGGATCTGGCCTTGCTGTGGCCTTGGCGTAG
GCCAGCAGCTACAGCTCCAGTTGGACCCCTAGCCTGGGAACCTCCATATACCACAGGTGT
GGCCCTAAAAGAACTAAAGACAACAACAAATTAACAGTCTTATATTTCAGCTTTTTTGTC
TTACCATATATATCTAAAGCCCAAATGCTAATGAGCACTAGACATAAAAAAATTAAAGAG
AAGAAGAAATATCTTCTAAAAGAATGGATAAATTGGATTTATTGAATATTTAAGAGCTGG
CTGTATATTCATTGTAAAAAATTAGGCCTAATTTAGAAAACTACTGGCTGGTTGAAATTA
AAATATTTTCCCTTGGCATAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               427-545, - strand, RNAz p=0.523191

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               427-545, - strand, RNAz p=0.523191

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               388-620, gnl|bosTau2|chr2 (19967049-19966820)
               

               
               388-620, gnl|Hg17|chr2 (161889460-161889699)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               388-620, gnl|bosTau2|chr2 (19967049-19966820)
               

               
               388-620, gnl|Hg17|chr2 (161889460-161889699)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)

	388-620, gnl\|bosTau2\|chr2 (19967049-19966820)
	388-620, gnl\|Hg17\|chr2 (161889460-161889699)