Non-Coding RNA Search

Ss1.1-rlyg26_i1.5

Sequence:


               
               CCTGCAGGGCCTCCAAGGCTCAGAAGAAATCTGGGCCCAACCAGCAAGCCTCCAGCACCC
AGGTTCTTGCTCCCCACTGGCCCCTGGCCCAGGCCCACACCCTTGGCCAGGCCCCAGAAA
GTGGCTGTAGAGAAACACATGGAAAGTTTAGCATTTAGAAAGGTCAAGGGCATATGTCCA
CGCATGGAGGTGACTCTGAACCCCAAGCGGGTGACTGCGATGGAGGGTGATGGGTAGGAG
GTAGGGCCTGCAGGTTGGAGGGTGAGAAGCAGGGCTCAGGCTAAGGACAGAGCAGTCCCA
CACTTGGAGAGACCTGGCCTTGCAGCCCTCAGCCCGAGACAGGGTGAAGGAAGGACCCTC
AGTTCTCCACAGGAGGTGAAGGAAACACAGCCTCCTCCCCTCTTGCTGTAAATGCCCCAG
CACAGCCTCCTGGGGCGGCTTCCTGAGTGTCTCTTCCACCGTTGCAGTGGCACTTTCCCA
GGCCTGCCTGCCAGCATTGTGCAAGGCCTGGAGGAGAAGCAGGAAGTGAAACTGGCTGAA
ACAGAAAGCTACATGGACCAGCTAGGTTCCCACATCAACTGGGGGGCAGTTTGCTTCCTG
GCAGTTTCATGTCTTCTGGTCCCTGGAACCCACCCAGTCCAGAAATCAGGACCCCCCCCA
CCCCCCTTGAAGGTTTTTACCTCTACTGGATCTGGGGCCAAAAGGTTCCTGAGGCTCCGC
AGTCAGCCTGAAGGCAGCAGCTCCCCAAAGGCTAGAAAATCCCTAAGAGGCAGGAGGCCG
GGCGATGGGGGAAGGCTGAGAGAAGGGGCTGAAAGTGGGAGAAGAGCTATGGCTCGAAGG
GAAGGAGCTGTTGGTGAGAGCCGTCTGTATAATGCTGCTGGCTGAGTTCAGGACCATGTT
CCACAGCCGAAATGACAGTCCCTTAACTTGGAGAGACTGTTTGTGGGAGCACTTAGCTTG
TGCTTAGCCCCTAGTAGGTCCTCAATAAAGCATGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCAGGGCCTCCAAGGCTCAGAAGAAATCTGGGCCCAACCAGCAAGCCTCCAGCACCC
AGGTTCTTGCTCCCCACTGGCCCCTGGCCCAGGCCCACACCCTTGGCCAGGCCCCAGAAA
GTGGCTGTAGAGAAACACATGGAAAGTTTAGCATTTAGAAAGGTCAAGGGCATATGTCCA
CGCATGGAGGTGACTCTGAACCCCAAGCGGGTGACTGCGATGGAGGGTGATGGGTAGGAG
GTAGGGCCTGCAGGTTGGAGGGTGAGAAGCAGGGCTCAGGCTAAGGACAGAGCAGTCCCA
CACTTGGAGAGACCTGGCCTTGCAGCCCTCAGCCCGAGACAGGGTGAAGGAAGGACCCTC
AGTTCTCCACAGGAGGTGAAGGAAACACAGCCTCCTCCCCTCTTGCTGTAAATGCCCCAG
CACAGCCTCCTGGGGCGGCTTCCTGAGTGTCTCTTCCACCGTTGCAGTGGCACTTTCCCA
GGCCTGCCTGCCAGCATTGTGCAAGGCCTGGAGGAGAAGCAGGAAGTGAAACTGGCTGAA
ACAGAAAGCTACATGGACCAGCTAGGTTCCCACATCAACTGGGGGGCAGTTTGCTTCCTG
GCAGTTTCATGTCTTCTGGTCCCTGGAACCCACCCAGTCCAGAAATCAGGACCCCCCCCA
CCCCCCTTGAAGGTTTTTACCTCTACTGGATCTGGGGCCAAAAGGTTCCTGAGGCTCCGC
AGTCAGCCTGAAGGCAGCAGCTCCCCAAAGGCTAGAAAATCCCTAAGAGGCAGGAGGCCG
GGCGATGGGGGAAGGCTGAGAGAAGGGGCTGAAAGTGGGAGAAGAGCTATGGCTCGAAGG
GAAGGAGCTGTTGGTGAGAGCCGTCTGTATAATGCTGCTGGCTGAGTTCAGGACCATGTT
CCACAGCCGAAATGACAGTCCCTTAACTTGGAGAGACTGTTTGTGGGAGCACTTAGCTTG
TGCTTAGCCCCTAGTAGGTCCTCAATAAAGCATGGT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               161-491, - strand, RNAz p=0.940872
               

               
               532-649, - strand, RNAz p=0.9789
               

               
               727-831, + strand, RNAz p=0.783799

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-491, - strand, RNAz p=0.940872
               

               
               532-649, - strand, RNAz p=0.9789
               

               
               727-831, + strand, RNAz p=0.783799

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-118, gnl|bosTau2|chr5 (19382045-19382168)
               

               
               1-118, gnl|Hg17|chr12 (50602442-50602543)
               

               
               1-118, gnl|Mm7|chr15 (101129693-101129825)
               


               
               122-968, gnl|bosTau2|chr5 (19382194-19383047)
               

               
               122-968, gnl|Hg17|chr12 (50602569-50603374)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-118, gnl|bosTau2|chr5 (19382045-19382168)
               

               
               1-118, gnl|Hg17|chr12 (50602442-50602543)
               

               
               1-118, gnl|Mm7|chr15 (101129693-101129825)
               


               
               122-968, gnl|bosTau2|chr5 (19382194-19383047)
               

               
               122-968, gnl|Hg17|chr12 (50602569-50603374)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cag (0.302389)
               

               
               cly (0.241284)
               

               
               lyg (0.133103)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.302389)
               

               
               cly (0.241284)
               

               
               lyg (0.133103)
               

               
               jca (0.11396)

	161-491, - strand, RNAz p=0.940872
	532-649, - strand, RNAz p=0.9789
	727-831, + strand, RNAz p=0.783799

	1-118, gnl\|bosTau2\|chr5 (19382045-19382168)
	1-118, gnl\|Hg17\|chr12 (50602442-50602543)
	1-118, gnl\|Mm7\|chr15 (101129693-101129825)

	122-968, gnl\|bosTau2\|chr5 (19382194-19383047)
	122-968, gnl\|Hg17\|chr12 (50602569-50603374)