Non-Coding RNA Search

Ss1.1-rlyg27_d4.5

Sequence:


               
               CTTGCAGATGCTTTTGAACAAATGTGGCAGAAAAGACGCTACAATGAGCTACTGTTTATT
ATTGACACTTGTCAAGGAGCATCCATGTATGAGAGATTTTATTCTCCTAACATAATGGCT
TTAGCCAGTAGCCAAGTGGGAGAGGATTCACTCTCGCATCAACCTGATCCTGCAATTGGA
GTCCATCTTATGGATAGATACACATTTTATGTCTTAGAATTTTTGGAGGAAATTAATCCA
GCCAGTCAAACTAATATGAATGACCTTTTTCAGGTGTGCCCCAAAAGTCTATGTGTGTCT
ACCCCTGGACATCGCACTGATCTTTTTCAGAGGGATCCTAAACATGTCCTGATAACTGAT
TTCTTTGGAAGTGTACGGAAAGTGGAAATTACAATAGAGACTATAAGTTTGCAGCCAGAT
TCAGGAATCATGAAAAGCAGCCATGAGAAAGCTGGAATGGATGAGGAACTAATGGAACCT
CTGAAATATGCTGAACAACTTCCTGTAGCTCAGATAATACACCAGAAACCAAAGCTGAAA
GATTGGCATCCTCCTGGAGGATTTATTCTAGGATTGTGGGCACTCATTATCATGGTTTTC
TTCAAAACGTATGGAATCAAGCACATGAAATTCATTTTCTAGATGCAATGATGTATGAAG
AAGACTACATGGAAGACTACAACCGTGGATAAAAGTTGATGTCAGTATATTTGACAAAAT
ACATTGCTCTTGTGTGACTTTGTGAAAAATACAAGGGAACTAAATTTGAATGAACCATTG
ATTTTATAACTTAAAGATAATTGTTAGTGAGAGTGTTAAATGCTAAATATGTATCCGTTT
TTCATTTTGTGTGTTATTAAAGTATTTGGCCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGCAGATGCTTTTGAACAAATGTGGCAGAAAAGACGCTACAATGAGCTACTGTTTATT
ATTGACACTTGTCAAGGAGCATCCATGTATGAGAGATTTTATTCTCCTAACATAATGGCT
TTAGCCAGTAGCCAAGTGGGAGAGGATTCACTCTCGCATCAACCTGATCCTGCAATTGGA
GTCCATCTTATGGATAGATACACATTTTATGTCTTAGAATTTTTGGAGGAAATTAATCCA
GCCAGTCAAACTAATATGAATGACCTTTTTCAGGTGTGCCCCAAAAGTCTATGTGTGTCT
ACCCCTGGACATCGCACTGATCTTTTTCAGAGGGATCCTAAACATGTCCTGATAACTGAT
TTCTTTGGAAGTGTACGGAAAGTGGAAATTACAATAGAGACTATAAGTTTGCAGCCAGAT
TCAGGAATCATGAAAAGCAGCCATGAGAAAGCTGGAATGGATGAGGAACTAATGGAACCT
CTGAAATATGCTGAACAACTTCCTGTAGCTCAGATAATACACCAGAAACCAAAGCTGAAA
GATTGGCATCCTCCTGGAGGATTTATTCTAGGATTGTGGGCACTCATTATCATGGTTTTC
TTCAAAACGTATGGAATCAAGCACATGAAATTCATTTTCTAGATGCAATGATGTATGAAG
AAGACTACATGGAAGACTACAACCGTGGATAAAAGTTGATGTCAGTATATTTGACAAAAT
ACATTGCTCTTGTGTGACTTTGTGAAAAATACAAGGGAACTAAATTTGAATGAACCATTG
ATTTTATAACTTAAAGATAATTGTTAGTGAGAGTGTTAAATGCTAAATATGTATCCGTTT
TTCATTTTGTGTGTTATTAAAGTATTTGGCCAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|28502944|gb|AAH47203.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|28502944|gb|AAH47203.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               268-440, gnl|bosTau2|chr3 (48354164-48353992)
               

               
               268-440, gnl|Hg17|chr1 (77332327-77332155)
               

               
               268-440, gnl|Mm7|chr3 (152648806-152648978)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               268-440, gnl|bosTau2|chr3 (48354164-48353992)
               

               
               268-440, gnl|Hg17|chr1 (77332327-77332155)
               

               
               268-440, gnl|Mm7|chr3 (152648806-152648978)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               lyg (0.399308)
               

               
               ova (0.387397)
               

               
               thg (0.380373)
               

               
               bfe (0.299715)
               

               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.399308)
               

               
               ova (0.387397)
               

               
               thg (0.380373)
               

               
               bfe (0.299715)
               

               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	268-440, gnl\|bosTau2\|chr3 (48354164-48353992)
	268-440, gnl\|Hg17\|chr1 (77332327-77332155)
	268-440, gnl\|Mm7\|chr3 (152648806-152648978)

	lyg (0.399308)
	ova (0.387397)
	thg (0.380373)
	bfe (0.299715)
	fce (0.271592)
	mgp (0.230681)
	col (0.195008)
	sag (0.182715)
	mgm (0.180343)
	mga (0.160205)
	fco (0.157208)
	kid (0.129735)
	ret (0.128733)
	bla (0.124347)
	tra (0.123092)
	eru (0.120048)
	pgl (0.118483)
	jca (0.11396)
	spc (0.113366)