Non-Coding RNA Search

Ss1.1-rlyg27_h7.5

Sequence:


               
               GCCCGGCGGCCTAGAAAAGCCTAGAAAAAGCTCGTCTTTTCTTCCGCCTCCGGGTCCGCG
CGTCAGTGACCTGCGCAGATCCCAAGAGACGAATCGCGGCGCGCGCGGGTGCGGCCGCCC
CCTCTAGCGGGGAGGGGCTGGGGGCGGGGGCGAGCGCGCCTGCGCGCTCGGCGGCCTTTT
CCCGAGTTCACGTGGACGGAGGGCAGTACTGCAGGTCTTTCCTTGCGGCGGCTTGAGAGC
AGGCTAGCAGTTGCGGTGGCCGGGGTCATGGCAGGACAAGCATTTAGAAAGTTTCTTCCT
CTCTTTGATCGAGTATTAGTTGAAAGAAGTGCAGCTGAAACGGTAACCAAAGGAGGCATT
ATGCTTCCAGAAAAATCTCAAGGAAAAGTATTGCAAGCAACCGTAGTAGCTGTTGGATCA
GGCTCTAAAGGAAAGGGTGGAGAGATTCAACCAGTTAGTGTCAAAGTTGGAGATAAAGTT
CTTCTGCCAGAATATGGAGGCACCAGAGTAGTTCTGGATGACAAGGATTATTTCTTATTT
AGAGATGGTGACATTCTTGGAAAATACGTAGACTGAAACAAGTCACTGTCTAATGGCATC
ACATGAAGCTGCCCCCATTCCACTGAAGTTCTGAGATCTTTTCATCATGTAAATAATTTC
AATGTCTGTCTTTTATAATAAACTAATGATATCCAAACTGATGACATCCAGTGCTTCTAA
AATTTAGTTTCACTGTACCGATGTACACATTTACAAATAAAAATATATAAATGAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCGGCGGCCTAGAAAAGCCTAGAAAAAGCTCGTCTTTTCTTCCGCCTCCGGGTCCGCG
CGTCAGTGACCTGCGCAGATCCCAAGAGACGAATCGCGGCGCGCGCGGGTGCGGCCGCCC
CCTCTAGCGGGGAGGGGCTGGGGGCGGGGGCGAGCGCGCCTGCGCGCTCGGCGGCCTTTT
CCCGAGTTCACGTGGACGGAGGGCAGTACTGCAGGTCTTTCCTTGCGGCGGCTTGAGAGC
AGGCTAGCAGTTGCGGTGGCCGGGGTCATGGCAGGACAAGCATTTAGAAAGTTTCTTCCT
CTCTTTGATCGAGTATTAGTTGAAAGAAGTGCAGCTGAAACGGTAACCAAAGGAGGCATT
ATGCTTCCAGAAAAATCTCAAGGAAAAGTATTGCAAGCAACCGTAGTAGCTGTTGGATCA
GGCTCTAAAGGAAAGGGTGGAGAGATTCAACCAGTTAGTGTCAAAGTTGGAGATAAAGTT
CTTCTGCCAGAATATGGAGGCACCAGAGTAGTTCTGGATGACAAGGATTATTTCTTATTT
AGAGATGGTGACATTCTTGGAAAATACGTAGACTGAAACAAGTCACTGTCTAATGGCATC
ACATGAAGCTGCCCCCATTCCACTGAAGTTCTGAGATCTTTTCATCATGTAAATAATTTC
AATGTCTGTCTTTTATAATAAACTAATGATATCCAAACTGATGACATCCAGTGCTTCTAA
AATTTAGTTTCACTGTACCGATGTACACATTTACAAATAAAAATATATAAATGAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6WSP6_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6WSP6_PIG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               5-271, gnl|bosTau2|chr19 (28769725-28769996)
               

               
               5-271, gnl|Hg17|chr2 (198190397-198190670)
               

               
               5-271, gnl|Mm7|chr1 (55335462-55335723)
               


               
               576-791, gnl|bosTau2|chr12 (20624991-20624780)
               

               
               576-791, gnl|Hg17|chr12 (100769562-100769367)
               

               
               576-791, gnl|Mm7|chr18 (47489970-47490170)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-271, gnl|bosTau2|chr19 (28769725-28769996)
               

               
               5-271, gnl|Hg17|chr2 (198190397-198190670)
               

               
               5-271, gnl|Mm7|chr1 (55335462-55335723)
               


               
               576-791, gnl|bosTau2|chr12 (20624991-20624780)
               

               
               576-791, gnl|Hg17|chr12 (100769562-100769367)
               

               
               576-791, gnl|Mm7|chr18 (47489970-47490170)

Expressed library(ies): 77 entry(ies)

More info

Expressed library(ies): 77 entry(ies)

Help | Less info


               
               sug (6.87373)
               

               
               mgp (3.69089)
               

               
               cki (3.63516)
               

               
               cte (2.34192)
               

               
               cbe (2.15311)
               

               
               sme (2.13806)
               

               
               ova (1.54959)
               

               
               cst (1.5404)
               

               
               isp (1.50376)
               

               
               rec (1.38456)
               

               
               spc (1.36039)
               

               
               lyg (1.33103)
               

               
               vin (1.33023)
               

               
               nje (1.32736)
               

               
               sin (1.22463)
               

               
               csk (1.12597)
               

               
               kid (1.03788)
               

               
               cje (0.991408)
               

               
               mga (0.96123)
               

               
               bfe (0.899146)
               

               
               mas (0.84122)
               

               
               amn (0.835422)
               

               
               hea (0.817996)
               

               
               fcc (0.791139)
               

               
               cag (0.755972)
               

               
               pgl (0.7109)
               

               
               hlv (0.696282)
               

               
               cut (0.679694)
               

               
               ssp (0.677599)
               

               
               eje (0.593003)
               

               
               col (0.585023)
               

               
               ecc (0.575175)
               

               
               che (0.545256)
               

               
               duo (0.518403)
               

               
               pro (0.512033)
               

               
               fhi (0.508733)
               

               
               thg (0.507164)
               

               
               ese (0.506009)
               

               
               fco (0.471624)
               

               
               hyp (0.42851)
               

               
               fli (0.405762)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               cmu (0.372787)
               

               
               nep (0.36785)
               

               
               sto (0.359648)
               

               
               fty (0.351679)
               

               
               ton (0.351)
               

               
               fbs (0.350693)
               

               
               csp (0.322373)
               

               
               tbr (0.308356)
               

               
               eli (0.303628)
               

               
               fat (0.294855)
               

               
               pty (0.285429)
               

               
               nca (0.273748)
               

               
               cov (0.264306)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 77 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (6.87373)
               

               
               mgp (3.69089)
               

               
               cki (3.63516)
               

               
               cte (2.34192)
               

               
               cbe (2.15311)
               

               
               sme (2.13806)
               

               
               ova (1.54959)
               

               
               cst (1.5404)
               

               
               isp (1.50376)
               

               
               rec (1.38456)
               

               
               spc (1.36039)
               

               
               lyg (1.33103)
               

               
               vin (1.33023)
               

               
               nje (1.32736)
               

               
               sin (1.22463)
               

               
               csk (1.12597)
               

               
               kid (1.03788)
               

               
               cje (0.991408)
               

               
               mga (0.96123)
               

               
               bfe (0.899146)
               

               
               mas (0.84122)
               

               
               amn (0.835422)
               

               
               hea (0.817996)
               

               
               fcc (0.791139)
               

               
               cag (0.755972)
               

               
               pgl (0.7109)
               

               
               hlv (0.696282)
               

               
               cut (0.679694)
               

               
               ssp (0.677599)
               

               
               eje (0.593003)
               

               
               col (0.585023)
               

               
               ecc (0.575175)
               

               
               che (0.545256)
               

               
               duo (0.518403)
               

               
               pro (0.512033)
               

               
               fhi (0.508733)
               

               
               thg (0.507164)
               

               
               ese (0.506009)
               

               
               fco (0.471624)
               

               
               hyp (0.42851)
               

               
               fli (0.405762)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               cmu (0.372787)
               

               
               nep (0.36785)
               

               
               sto (0.359648)
               

               
               fty (0.351679)
               

               
               ton (0.351)
               

               
               fbs (0.350693)
               

               
               csp (0.322373)
               

               
               tbr (0.308356)
               

               
               eli (0.303628)
               

               
               fat (0.294855)
               

               
               pty (0.285429)
               

               
               nca (0.273748)
               

               
               cov (0.264306)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	5-271, gnl\|bosTau2\|chr19 (28769725-28769996)
	5-271, gnl\|Hg17\|chr2 (198190397-198190670)
	5-271, gnl\|Mm7\|chr1 (55335462-55335723)

	576-791, gnl\|bosTau2\|chr12 (20624991-20624780)
	576-791, gnl\|Hg17\|chr12 (100769562-100769367)
	576-791, gnl\|Mm7\|chr18 (47489970-47490170)

	sug (6.87373)
	mgp (3.69089)
	cki (3.63516)
	cte (2.34192)
	cbe (2.15311)
	sme (2.13806)
	ova (1.54959)
	cst (1.5404)
	isp (1.50376)
	rec (1.38456)
	spc (1.36039)
	lyg (1.33103)
	vin (1.33023)
	nje (1.32736)
	sin (1.22463)
	csk (1.12597)
	kid (1.03788)
	cje (0.991408)
	mga (0.96123)
	bfe (0.899146)
	mas (0.84122)
	amn (0.835422)
	hea (0.817996)
	fcc (0.791139)
	cag (0.755972)
	pgl (0.7109)
	hlv (0.696282)
	cut (0.679694)
	ssp (0.677599)
	eje (0.593003)
	col (0.585023)
	ecc (0.575175)
	che (0.545256)
	duo (0.518403)
	pro (0.512033)
	fhi (0.508733)
	thg (0.507164)
	ese (0.506009)
	fco (0.471624)
	hyp (0.42851)
	fli (0.405762)
	aor (0.390549)
	elu (0.385356)
	cmu (0.372787)
	nep (0.36785)
	sto (0.359648)
	fty (0.351679)
	ton (0.351)
	fbs (0.350693)
	csp (0.322373)
	tbr (0.308356)
	eli (0.303628)
	fat (0.294855)
	pty (0.285429)
	nca (0.273748)
	cov (0.264306)
	eep (0.245128)
	cly (0.241284)
	med (0.232504)
	jca (0.22792)
	tes (0.207814)
	sag (0.182715)
	gul (0.177588)
	ill (0.175593)
	mcp (0.170648)
	eye (0.170503)
	nco (0.161734)
	lun (0.150489)
	ski (0.146735)
	liv (0.146284)
	spl (0.143184)
	nmm (0.132802)
	ute (0.132784)
	bla (0.124347)
	ebs (0.118301)
	jej (0.0989218)
	ldo (0.0970026)