Non-Coding RNA Search

Ss1.1-rlyg28_l24.5

Sequence:


               
               TTTCTAAAAAGAGGAATGCTAGTACCTTGGCCAGAGCTGTCCTCAAGGCAATAGTCAACT
ACTTTTCAACATATGATACTGATGTCTGCTATACAGAGTGGGGGTGTAGTGCCAATTTGG
AGTCAAGAAACCATCCAACCAAATGCAGTTTAATTCAGAAAAACACCTGTTGATAACAAA
AAGCAATAAAGACACTAATTCCAGGGACACAGACCTTGGTGAAATGCCAAATGGAAAATG
GTGCTTTAAATGGCAAACTCTTACAATGTAAGGAATAAAGTAAAACCTCATTAGCTTGGA
ATTCCTGATCATTCAGCTCAGGTATTCGAGACAAGGTTAAGAGAAGACAGTTCAAACTAC
TGAAGAGAATGAATTTTTACCTAAGGACTTTGGAAGTATCTACTCCCCTTAAATGTAAGT
TACATTACCTATTCATTAAAGGAAGTCTAAGCACTTGTACTTGGCAGATTACTGTATTAA
ACTTGAAAGTAATAAAAATCTTTTTAAAGAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCTAAAAAGAGGAATGCTAGTACCTTGGCCAGAGCTGTCCTCAAGGCAATAGTCAACT
ACTTTTCAACATATGATACTGATGTCTGCTATACAGAGTGGGGGTGTAGTGCCAATTTGG
AGTCAAGAAACCATCCAACCAAATGCAGTTTAATTCAGAAAAACACCTGTTGATAACAAA
AAGCAATAAAGACACTAATTCCAGGGACACAGACCTTGGTGAAATGCCAAATGGAAAATG
GTGCTTTAAATGGCAAACTCTTACAATGTAAGGAATAAAGTAAAACCTCATTAGCTTGGA
ATTCCTGATCATTCAGCTCAGGTATTCGAGACAAGGTTAAGAGAAGACAGTTCAAACTAC
TGAAGAGAATGAATTTTTACCTAAGGACTTTGGAAGTATCTACTCCCCTTAAATGTAAGT
TACATTACCTATTCATTAAAGGAAGTCTAAGCACTTGTACTTGGCAGATTACTGTATTAA
ACTTGAAAGTAATAAAAATCTTTTTAAAGAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               133-236, - strand, RNAz p=0.756095
               

               
               268-416, - strand, RNAz p=0.996613

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               133-236, - strand, RNAz p=0.756095
               

               
               268-416, - strand, RNAz p=0.996613

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               41-510, gnl|bosTau2|chr10 (54250193-54249731)
               

               
               41-510, gnl|canFam2|chr8 (44408536-44409001)
               

               
               41-510, gnl|hg17|chr14 (66922293-66922766)
               

               
               41-510, gnl|Hg17|chr14 (66922482-66922984)
               

               
               41-510, gnl|loxAfr1|scaffold_2993 (28482-28028)
               

               
               41-510, gnl|mm7|chr12 (76846286-76846732)
               

               
               41-510, gnl|Mm7|chr12 (76846480-76846921)
               

               
               41-510, gnl|oryCun1|scaffold_201784 (587-1013)
               

               
               41-510, gnl|panTro1|chr15 (66538031-66538504)
               

               
               41-510, gnl|rheMac2|chr7 (130491315-130491791)
               

               
               41-510, gnl|rn3|chr6 (101525930-101526386)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-510, gnl|bosTau2|chr10 (54250193-54249731)
               

               
               41-510, gnl|canFam2|chr8 (44408536-44409001)
               

               
               41-510, gnl|hg17|chr14 (66922293-66922766)
               

               
               41-510, gnl|Hg17|chr14 (66922482-66922984)
               

               
               41-510, gnl|loxAfr1|scaffold_2993 (28482-28028)
               

               
               41-510, gnl|mm7|chr12 (76846286-76846732)
               

               
               41-510, gnl|Mm7|chr12 (76846480-76846921)
               

               
               41-510, gnl|oryCun1|scaffold_201784 (587-1013)
               

               
               41-510, gnl|panTro1|chr15 (66538031-66538504)
               

               
               41-510, gnl|rheMac2|chr7 (130491315-130491791)
               

               
               41-510, gnl|rn3|chr6 (101525930-101526386)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               vin (0.332557)
               

               
               aor (0.195274)
               

               
               ton (0.1755)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               sug (0.127291)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               aor (0.195274)
               

               
               ton (0.1755)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               sug (0.127291)

	133-236, - strand, RNAz p=0.756095
	268-416, - strand, RNAz p=0.996613

	41-510, gnl\|bosTau2\|chr10 (54250193-54249731)
	41-510, gnl\|canFam2\|chr8 (44408536-44409001)
	41-510, gnl\|hg17\|chr14 (66922293-66922766)
	41-510, gnl\|Hg17\|chr14 (66922482-66922984)
	41-510, gnl\|loxAfr1\|scaffold_2993 (28482-28028)
	41-510, gnl\|mm7\|chr12 (76846286-76846732)
	41-510, gnl\|Mm7\|chr12 (76846480-76846921)
	41-510, gnl\|oryCun1\|scaffold_201784 (587-1013)
	41-510, gnl\|panTro1\|chr15 (66538031-66538504)
	41-510, gnl\|rheMac2\|chr7 (130491315-130491791)
	41-510, gnl\|rn3\|chr6 (101525930-101526386)

	vin (0.332557)
	aor (0.195274)
	ton (0.1755)
	bfe (0.149858)
	ski (0.146735)
	lyg (0.133103)
	ova (0.129132)
	sug (0.127291)