Non-Coding RNA Search

Ss1.1-rlyg29_j7.5

Sequence:


               
               CTGGGAACCTCCATATGCCATGTGTGTGGCCCAAAAAAAGCAAAAAAACAAAAACAAATA
TATGTCTCAGCCCAAATGGACATAGAAGTCTTTTAAATGCTGAAGCTATAGTACATGCTT
AATTATTTTTTAAGTCATTCATAGAGGAAACTGTTAGTGTAGTGTTATCAGGAAGTTATT
GATGTGTATGTGTGGTTTATGGTGATTCTGTATGTGCTCCCAGCTTCAAAAACCCTTAGA
ACTACTGTTGTGGTGTCTGGAAGGGTCAGTTGTTGGTTCTTCAAATTATACCTGTGCAGC
CTGGGTCTGAGTTTTTAAAGAATATTTAACTAAGAGGTTTCCTTAGCAAAAGGAAGTTTG
AGTTGTATCCTGGGTTTTTGCTAGGTTAACATTGGCTTCAGTTAAATCGTTTGAATTATA
AAGTAAGTATAATTACGGTGAAGAACTTCAGTCTCATTTTTAAATGCTGAATCCCATTTT
ATTTCTTGAATTAATGGTAGGTCAAAATTCAGGACCCCTGGAATATGCCAGCTTTGGTTT
GGGGGTTGTGTGTGTTTTTGTTATGTTGATTTGTTTGCCTGATTTTTAACGAAACTGAAA
CCACTAGATCTGCCAGTGGAGGAAAATGCTTTGCTCTGAAGATTCTGCAATTGTTCAGGT
GTATCGTGGTTCATAGATTACAAAGAATAATGCTAGTTAAATGCCAATGAACTATTTTTA
CTCTTTTTATATGAAATGTACAAAATTTGGGGGGTGATGGTGGCAGTGGTGCCTCTTATA
CTACCTGATGTAAAACACTTGAACGTTCCCATCAATATTGCCATCATCTGTTTAATACTC
CCAGTATATTTTCTCAAAGTCTGTTTACTTAAAATTGTATGGAATGACATAATAAGCAAT
AAAATCTGAATTACACACAAAAAAAAAAAAAAAAAAAAAAGGGGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGAACCTCCATATGCCATGTGTGTGGCCCAAAAAAAGCAAAAAAACAAAAACAAATA
TATGTCTCAGCCCAAATGGACATAGAAGTCTTTTAAATGCTGAAGCTATAGTACATGCTT
AATTATTTTTTAAGTCATTCATAGAGGAAACTGTTAGTGTAGTGTTATCAGGAAGTTATT
GATGTGTATGTGTGGTTTATGGTGATTCTGTATGTGCTCCCAGCTTCAAAAACCCTTAGA
ACTACTGTTGTGGTGTCTGGAAGGGTCAGTTGTTGGTTCTTCAAATTATACCTGTGCAGC
CTGGGTCTGAGTTTTTAAAGAATATTTAACTAAGAGGTTTCCTTAGCAAAAGGAAGTTTG
AGTTGTATCCTGGGTTTTTGCTAGGTTAACATTGGCTTCAGTTAAATCGTTTGAATTATA
AAGTAAGTATAATTACGGTGAAGAACTTCAGTCTCATTTTTAAATGCTGAATCCCATTTT
ATTTCTTGAATTAATGGTAGGTCAAAATTCAGGACCCCTGGAATATGCCAGCTTTGGTTT
GGGGGTTGTGTGTGTTTTTGTTATGTTGATTTGTTTGCCTGATTTTTAACGAAACTGAAA
CCACTAGATCTGCCAGTGGAGGAAAATGCTTTGCTCTGAAGATTCTGCAATTGTTCAGGT
GTATCGTGGTTCATAGATTACAAAGAATAATGCTAGTTAAATGCCAATGAACTATTTTTA
CTCTTTTTATATGAAATGTACAAAATTTGGGGGGTGATGGTGGCAGTGGTGCCTCTTATA
CTACCTGATGTAAAACACTTGAACGTTCCCATCAATATTGCCATCATCTGTTTAATACTC
CCAGTATATTTTCTCAAAGTCTGTTTACTTAAAATTGTATGGAATGACATAATAAGCAAT
AAAATCTGAATTACACACAAAAAAAAAAAAAAAAAAAAAAGGGGGGGG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               529-919, gnl|bosTau2|chr12 (20237472-20237091)
               

               
               529-919, gnl|Hg17|chr7 (39665927-39665591)
               

               
               529-919, gnl|Mm7|chr8 (46330416-46330787)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               529-919, gnl|bosTau2|chr12 (20237472-20237091)
               

               
               529-919, gnl|Hg17|chr7 (39665927-39665591)
               

               
               529-919, gnl|Mm7|chr8 (46330416-46330787)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               elu (0.385356)
               

               
               pty (0.285429)
               

               
               lyg (0.266205)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               pty (0.285429)
               

               
               lyg (0.266205)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

	529-919, gnl\|bosTau2\|chr12 (20237472-20237091)
	529-919, gnl\|Hg17\|chr7 (39665927-39665591)
	529-919, gnl\|Mm7\|chr8 (46330416-46330787)

	elu (0.385356)
	pty (0.285429)
	lyg (0.266205)
	sug (0.254582)
	mgp (0.230681)
	eye (0.170503)
	liv (0.146284)
	ste (0.135208)
	thg (0.126791)
	pgl (0.118483)