Ss1.1-rlyg29_p4.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAACTACTGCTCCTAGAATTTCTGCCACAGGCTCCACCTCAGTGTCAAAAGAAATCACAG CAAGCCCCAAAGTATCCTCCCCAGAAACCACTGCAGGAGCAACAGAAGATCAAGAAAATG AAAATAAAACAGGATGTCCAGCACCTCTTCCACCACCACCAGTTTGTCATGGTCCCCTGG GAGAAGAGAAGTCTCCTGGGGATGTATGGACCGCCAATTGCCATAAATGCACCTGTACCG AGGCAAAGACTGTAGACTGTAAACCCAAGGAGTGTCCTTCTCCACCCACATGCAAAACTG GAGAGAGACTCATCAAGTTCAAAGCTAATGATACCTGCTGTGAAATCGGACACTGTGAAA AAAGAACATGTTTATTTAACAATACAGACTATGAGGTTGGTTCTTCATTTGATGACCCCA ACAACCCATGTGTTACCTACTCCTGCCAGAACACTGGTTTCACAGCCGTGGTCCAAAACT GCCCAAAGCAGACCTGGTGCGCAGAAGAAGACAGAGTCTATGATTCAAAACAATGTTGCT ATACATGTAAGAGTAGTTGCAAACCTTCACCCGTGAATGTGACTGTTAGGTACAATGGTT GCACGATTAAAGTTGAGATGGCAAGATGTGTAGGGGAATGCAAAAAGACTGTCACGTATG ATTATGACATCTTCCAGTTGAAAAATTCATGTCTTTGCTGCCAAGAAGAAGATTACGAGT TCAGAGATATTGTTCTTGACTGTCCTGATGGTAGTACATTACCTTACAGATACAGGCACA TCACCGCGTGCTCCTGCTTAGATCCGTGCCAACAATCTATGACCTAATAATAACTAGATT ACTTTTCCAGTTGTACCAGGCCAGGTATTTATTTTATAAGCGAACAAAAACAATCACTAG TGAGATTAACTAAACATTTGTTTCTCACTCAAAAAAATGTCATCATTAGGCATTTTGTTC TTCTGGTGACTGGATCTGAAAAATAAATACCACTTTGCAAGCAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAACTACTGCTCCTAGAATTTCTGCCACAGGCTCCACCTCAGTGTCAAAAGAAATCACAG CAAGCCCCAAAGTATCCTCCCCAGAAACCACTGCAGGAGCAACAGAAGATCAAGAAAATG AAAATAAAACAGGATGTCCAGCACCTCTTCCACCACCACCAGTTTGTCATGGTCCCCTGG GAGAAGAGAAGTCTCCTGGGGATGTATGGACCGCCAATTGCCATAAATGCACCTGTACCG AGGCAAAGACTGTAGACTGTAAACCCAAGGAGTGTCCTTCTCCACCCACATGCAAAACTG GAGAGAGACTCATCAAGTTCAAAGCTAATGATACCTGCTGTGAAATCGGACACTGTGAAA AAAGAACATGTTTATTTAACAATACAGACTATGAGGTTGGTTCTTCATTTGATGACCCCA ACAACCCATGTGTTACCTACTCCTGCCAGAACACTGGTTTCACAGCCGTGGTCCAAAACT GCCCAAAGCAGACCTGGTGCGCAGAAGAAGACAGAGTCTATGATTCAAAACAATGTTGCT ATACATGTAAGAGTAGTTGCAAACCTTCACCCGTGAATGTGACTGTTAGGTACAATGGTT GCACGATTAAAGTTGAGATGGCAAGATGTGTAGGGGAATGCAAAAAGACTGTCACGTATG ATTATGACATCTTCCAGTTGAAAAATTCATGTCTTTGCTGCCAAGAAGAAGATTACGAGT TCAGAGATATTGTTCTTGACTGTCCTGATGGTAGTACATTACCTTACAGATACAGGCACA TCACCGCGTGCTCCTGCTTAGATCCGTGCCAACAATCTATGACCTAATAATAACTAGATT ACTTTTCCAGTTGTACCAGGCCAGGTATTTATTTTATAAGCGAACAAAAACAATCACTAG TGAGATTAACTAAACATTTGTTTCTCACTCAAAAAAATGTCATCATTAGGCATTTTGTTC TTCTGGTGACTGGATCTGAAAAATAAATACCACTTTGCAAGCAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 394-513, - strand, RNAz p=0.789329 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 394-513, - strand, RNAz p=0.789329 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 195-357, gnl|bosTau2|chr5 (26606791-26606953) | |
| 195-357, gnl|canFam2|chr27 (16127143-16126906) | |
| 195-357, gnl|dasNov1|scaffold_10510 (50082-50319) | |
| 195-357, gnl|echTel1|scaffold_266393 (8616-8853) | |
| 195-357, gnl|hg17|chr12 (39245658-39245881) | |
| 195-357, gnl|Hg17|chr12 (39245702-39245864) | |
| 195-357, gnl|loxAfr1|scaffold_5346 (55437-55674) | |
| 195-357, gnl|mm7|chr15 (92007818-92008058) | |
| 195-357, gnl|Mm7|chr15 (92007865-92008027) | |
| 195-357, gnl|monDom2|scaffold_133 (50841-51064) | |
| 195-357, gnl|oryCun1|scaffold_177746 (77306-77543) | |
| 195-357, gnl|panTro1|chr10 (39824826-39825049) | |
| 195-357, gnl|rheMac2|chr11 (37463950-37464187) | |
| 195-357, gnl|rn3|chr7 (130485896-130486129) | |
| 394-513, gnl|bosTau2|chr5 (26609143-26609263) | |
| 394-513, gnl|Hg17|chr12 (39247665-39247785) | |
| 394-513, gnl|Mm7|chr15 (92010283-92010403) | |
| 649-1004, gnl|bosTau2|chr5 (26611609-26611985) | |
| 649-1004, gnl|canFam2|chr27 (16122853-16122488) | |
| 649-1004, gnl|dasNov1|scaffold_10510 (54609-54967) | |
| 649-1004, gnl|echTel1|scaffold_266393 (14060-14416) | |
| 649-1004, gnl|hg17|chr12 (39250494-39250855) | |
| 649-1004, gnl|Hg17|chr12 (39250525-39250901) | |
| 649-1004, gnl|loxAfr1|scaffold_5346 (60855-61216) | |
| 649-1004, gnl|mm7|chr15 (92014141-92014486) | |
| 649-1004, gnl|Mm7|chr15 (92014173-92014532) | |
| 649-1004, gnl|monDom2|scaffold_133 (61799-62140) | |
| 649-1004, gnl|oryCun1|scaffold_177746 (81280-81638) | |
| 649-1004, gnl|panTro1|chr10 (39829665-39830026) | |
| 649-1004, gnl|rheMac2|chr11 (37468431-37468785) | |
| 649-1004, gnl|rn3|chr7 (130492079-130492410) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 195-357, gnl|bosTau2|chr5 (26606791-26606953) | |
| 195-357, gnl|canFam2|chr27 (16127143-16126906) | |
| 195-357, gnl|dasNov1|scaffold_10510 (50082-50319) | |
| 195-357, gnl|echTel1|scaffold_266393 (8616-8853) | |
| 195-357, gnl|hg17|chr12 (39245658-39245881) | |
| 195-357, gnl|Hg17|chr12 (39245702-39245864) | |
| 195-357, gnl|loxAfr1|scaffold_5346 (55437-55674) | |
| 195-357, gnl|mm7|chr15 (92007818-92008058) | |
| 195-357, gnl|Mm7|chr15 (92007865-92008027) | |
| 195-357, gnl|monDom2|scaffold_133 (50841-51064) | |
| 195-357, gnl|oryCun1|scaffold_177746 (77306-77543) | |
| 195-357, gnl|panTro1|chr10 (39824826-39825049) | |
| 195-357, gnl|rheMac2|chr11 (37463950-37464187) | |
| 195-357, gnl|rn3|chr7 (130485896-130486129) | |
| 394-513, gnl|bosTau2|chr5 (26609143-26609263) | |
| 394-513, gnl|Hg17|chr12 (39247665-39247785) | |
| 394-513, gnl|Mm7|chr15 (92010283-92010403) | |
| 649-1004, gnl|bosTau2|chr5 (26611609-26611985) | |
| 649-1004, gnl|canFam2|chr27 (16122853-16122488) | |
| 649-1004, gnl|dasNov1|scaffold_10510 (54609-54967) | |
| 649-1004, gnl|echTel1|scaffold_266393 (14060-14416) | |
| 649-1004, gnl|hg17|chr12 (39250494-39250855) | |
| 649-1004, gnl|Hg17|chr12 (39250525-39250901) | |
| 649-1004, gnl|loxAfr1|scaffold_5346 (60855-61216) | |
| 649-1004, gnl|mm7|chr15 (92014141-92014486) | |
| 649-1004, gnl|Mm7|chr15 (92014173-92014532) | |
| 649-1004, gnl|monDom2|scaffold_133 (61799-62140) | |
| 649-1004, gnl|oryCun1|scaffold_177746 (81280-81638) | |
| 649-1004, gnl|panTro1|chr10 (39829665-39830026) | |
| 649-1004, gnl|rheMac2|chr11 (37468431-37468785) | |
| 649-1004, gnl|rn3|chr7 (130492079-130492410) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| lyg (29.815) | |
| pty (3.13972) | |
| ste (0.540833) | |
| med (0.232504) | |
| fli (0.202881) | |
| fco (0.157208) | |
| che (0.136314) | |
| thg (0.126791) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lyg (29.815) | |
| pty (3.13972) | |
| ste (0.540833) | |
| med (0.232504) | |
| fli (0.202881) | |
| fco (0.157208) | |
| che (0.136314) | |
| thg (0.126791) |