Non-Coding RNA Search

Ss1.1-rlyg31_b7.5

Sequence:


               
               TCTTGCGTTATGAGGATTTGCAATATATTGTTCCATTTAAAGCCAATAAAAGTTTAATTG
ATGTTTAATACTGGTTTAGAAAATTTAAGGTCTTTTAAATCACAGTAGCTTTTTTTCAGG
TTAAAACCATTTATGATATTGCCAAAATAATGACAGGAAACGTACCTATTAAATGGTTAA
ACTTTTTTTTAATGGCTATGAAGGTCTGAATTGTTTCCCGAAGATTTGCTCTTAACTGAG
CTGTACTTTTTAGTTTAAAGCAAAGAAGGCTGTGCCAATTCAGGCTTGTGAGTAATTTCT
ACTGGGGCATCAGAGTCTTGCTGGGCTGAATCTGCTTCTTCTTGTTTCAATATTATGAAG
AAGGGCTTGAAATTTAGAGCTTGAAGTTATTTAAAATACTAAGTCATTTTACGTTTCCAT
TTTATTAACGGGATGTTGCAATCAGTTGTAAACTAATAAACTTATAAAGTAATTGGCACA
AAGACTCCTTGAACAAAAATTGCACAGTAAAGTACCGAAAGTATCTAATTTGGAGACTTA
AAATTTTTGCTATATTTAAAACAACGGCTTTTACATTGAAAAACTAATAGGAACTCTACA
TATGTTAATTCTTTATAAAACCTGACTCAAATCAGTGTACTCTCTATTTTGTTGCCTTAC
CTGAATCAGTCCTGTTGGGTTGGAAATAGATTTCTTTATGTACCCAAATTTGATTTAAAA
GTAAATTCTAGTTATGAAGCACTTTTAAAAACCAGAAGCACATTTTTTTCTGCACAAACC
AGTTACAAAGTTCAAAAGTGTTTCTTATGCTTTAAGACTCAGTTTTTAACTTTGTAAAAC
CATGTCCGAGAGACTTGGCACTTCTGCATTATTGTGTGTTCAGTTTCTTTTTTAAAAAAA
ATTTGGCTGGGAGGACATTGGAAAAAGATTTTCTGGCATTCTTGTTCACTTGGTTACATT
TGTATAAAGTTCTGATTGCCAGTTGCTCAGAAAACAAGTGACAAGGCAGAATTCTTAAAA
GAATTAAAGTTCCTTAAACCTAAGGCTGAATCTTGAATACATTATTGAATTCTTTAATAA
CCCTGATGGCTAGCAGATTGACAGCTGCGTATTTGGCATGCTTTGTTTTTTGTTTGGTTT
TGGGGGTTTTTTTGTTTTTTTGTTTTTTTTTGGACTTTATTTTTCATTGCAGATTTCTTT
GGCAATGTACAGTAAATTTTGTAAACTTGCATCAAGTTTATGAATAAAGAACCATTTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTGCGTTATGAGGATTTGCAATATATTGTTCCATTTAAAGCCAATAAAAGTTTAATTG
ATGTTTAATACTGGTTTAGAAAATTTAAGGTCTTTTAAATCACAGTAGCTTTTTTTCAGG
TTAAAACCATTTATGATATTGCCAAAATAATGACAGGAAACGTACCTATTAAATGGTTAA
ACTTTTTTTTAATGGCTATGAAGGTCTGAATTGTTTCCCGAAGATTTGCTCTTAACTGAG
CTGTACTTTTTAGTTTAAAGCAAAGAAGGCTGTGCCAATTCAGGCTTGTGAGTAATTTCT
ACTGGGGCATCAGAGTCTTGCTGGGCTGAATCTGCTTCTTCTTGTTTCAATATTATGAAG
AAGGGCTTGAAATTTAGAGCTTGAAGTTATTTAAAATACTAAGTCATTTTACGTTTCCAT
TTTATTAACGGGATGTTGCAATCAGTTGTAAACTAATAAACTTATAAAGTAATTGGCACA
AAGACTCCTTGAACAAAAATTGCACAGTAAAGTACCGAAAGTATCTAATTTGGAGACTTA
AAATTTTTGCTATATTTAAAACAACGGCTTTTACATTGAAAAACTAATAGGAACTCTACA
TATGTTAATTCTTTATAAAACCTGACTCAAATCAGTGTACTCTCTATTTTGTTGCCTTAC
CTGAATCAGTCCTGTTGGGTTGGAAATAGATTTCTTTATGTACCCAAATTTGATTTAAAA
GTAAATTCTAGTTATGAAGCACTTTTAAAAACCAGAAGCACATTTTTTTCTGCACAAACC
AGTTACAAAGTTCAAAAGTGTTTCTTATGCTTTAAGACTCAGTTTTTAACTTTGTAAAAC
CATGTCCGAGAGACTTGGCACTTCTGCATTATTGTGTGTTCAGTTTCTTTTTTAAAAAAA
ATTTGGCTGGGAGGACATTGGAAAAAGATTTTCTGGCATTCTTGTTCACTTGGTTACATT
TGTATAAAGTTCTGATTGCCAGTTGCTCAGAAAACAAGTGACAAGGCAGAATTCTTAAAA
GAATTAAAGTTCCTTAAACCTAAGGCTGAATCTTGAATACATTATTGAATTCTTTAATAA
CCCTGATGGCTAGCAGATTGACAGCTGCGTATTTGGCATGCTTTGTTTTTTGTTTGGTTT
TGGGGGTTTTTTTGTTTTTTTGTTTTTTTTTGGACTTTATTTTTCATTGCAGATTTCTTT
GGCAATGTACAGTAAATTTTGTAAACTTGCATCAAGTTTATGAATAAAGAACCATTTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               751-863, - strand, RNAz p=0.866356
               

               
               928-1045, - strand, RNAz p=0.578321

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               751-863, - strand, RNAz p=0.866356
               

               
               928-1045, - strand, RNAz p=0.578321

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               38-1161, gnl|bosTau2|chr21 (20734163-20735313)
               

               
               38-1161, gnl|Hg17|chr15 (73979240-73980362)
               

               
               38-1161, gnl|Mm7|chr9 (55236681-55237760)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-1161, gnl|bosTau2|chr21 (20734163-20735313)
               

               
               38-1161, gnl|Hg17|chr15 (73979240-73980362)
               

               
               38-1161, gnl|Mm7|chr9 (55236681-55237760)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               clu (0.837521)
               

               
               pro (0.512033)
               

               
               tra (0.492368)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.837521)
               

               
               pro (0.512033)
               

               
               tra (0.492368)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	751-863, - strand, RNAz p=0.866356
	928-1045, - strand, RNAz p=0.578321

	38-1161, gnl\|bosTau2\|chr21 (20734163-20735313)
	38-1161, gnl\|Hg17\|chr15 (73979240-73980362)
	38-1161, gnl\|Mm7\|chr9 (55236681-55237760)

	clu (0.837521)
	pro (0.512033)
	tra (0.492368)
	sme (0.305437)
	bfe (0.299715)
	fty (0.17584)
	fbs (0.175346)
	eye (0.170503)
	fhi (0.169578)
	nco (0.161734)
	tbr (0.154178)
	isp (0.150376)
	fat (0.147427)
	hyp (0.142837)
	csk (0.140746)
	hlv (0.139256)
	lyg (0.133103)
	kid (0.129735)
	ret (0.128733)
	eru (0.120048)
	ecc (0.115035)
	eje (0.0988338)
	ldo (0.0970026)