Non-Coding RNA Search

Ss1.1-rlyg33_f6.5.5

Sequence:


               
               CTGGGGCCAAACACATGCCCAGTCTTGGGTGCCTTAAGAATCTCACTAGTAAGGTCAGTG
TTAGGCTTGGAATAGGGATTTTAAAATTATCCTAGTTTATTGGCCACCTTTAAGTATGTT
CTATGGGCCTTCTTAAACTAGCAGTAACCTCTACTTCTCTGCCCCACTGCCTCCCAAATA
TACCATGGAGCTGACTAATTTTGTGACCATGTTATAATGGGAATATTTATACAGTAGCTC
TTCAGTCTTAAAATTTAGTAATTTTCATTCCAAAAATGCCCAGTGTGATGCTTTATAATC
CATAAAGTATGGTTTAAAGGCACAAGGTCATGGCCCCTGTCATAGCAGTTGAATGTGCAT
TGAAATATTTTTCTATGATTTTTAAAAAATTACAGTAGAAAAATAAGCTGTTGTAACACG
TAAGGTCATGACAGTTTATGTATTTATATTGAAATCAGATTTCTATAAACTTGTATTTGT
GTACAGGATTCTCAGTGGGTTTATATATTGTGACATTTTTATTCAAGGTTGAGATGTGGA
TTATGCTTAATAGTAAAAACTGAAATGAGACCATTTACTTTGTGTAAAATGCTGCACTGC
GCACGTTCGGAAATGTAAATTAATTTGCTGTATATAATATCTTGAGTTTGTTTATACCTC
TAAGTTTTTACACTGAAGATAAATTAGCTTTAAATACATTCAAAACTCTTTTTTTTAAAG
GAAATAAGCTGTTGGGCTAAATCTGTATAAATGTGCTTTTTATTTTCTGGATGTACAATG
AAAGTTTATACTTGTATTTCACTGCATCATATCTGATTGCAGAAATTAAAGCACAATTTA
CAATACTGCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGGCCAAACACATGCCCAGTCTTGGGTGCCTTAAGAATCTCACTAGTAAGGTCAGTG
TTAGGCTTGGAATAGGGATTTTAAAATTATCCTAGTTTATTGGCCACCTTTAAGTATGTT
CTATGGGCCTTCTTAAACTAGCAGTAACCTCTACTTCTCTGCCCCACTGCCTCCCAAATA
TACCATGGAGCTGACTAATTTTGTGACCATGTTATAATGGGAATATTTATACAGTAGCTC
TTCAGTCTTAAAATTTAGTAATTTTCATTCCAAAAATGCCCAGTGTGATGCTTTATAATC
CATAAAGTATGGTTTAAAGGCACAAGGTCATGGCCCCTGTCATAGCAGTTGAATGTGCAT
TGAAATATTTTTCTATGATTTTTAAAAAATTACAGTAGAAAAATAAGCTGTTGTAACACG
TAAGGTCATGACAGTTTATGTATTTATATTGAAATCAGATTTCTATAAACTTGTATTTGT
GTACAGGATTCTCAGTGGGTTTATATATTGTGACATTTTTATTCAAGGTTGAGATGTGGA
TTATGCTTAATAGTAAAAACTGAAATGAGACCATTTACTTTGTGTAAAATGCTGCACTGC
GCACGTTCGGAAATGTAAATTAATTTGCTGTATATAATATCTTGAGTTTGTTTATACCTC
TAAGTTTTTACACTGAAGATAAATTAGCTTTAAATACATTCAAAACTCTTTTTTTTAAAG
GAAATAAGCTGTTGGGCTAAATCTGTATAAATGTGCTTTTTATTTTCTGGATGTACAATG
AAAGTTTATACTTGTATTTCACTGCATCATATCTGATTGCAGAAATTAAAGCACAATTTA
CAATACTGCAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               377-490, - strand, RNAz p=0.902364
               

               
               728-848, - strand, RNAz p=0.993379

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               377-490, - strand, RNAz p=0.902364
               

               
               728-848, - strand, RNAz p=0.993379

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-848, gnl|bosTau2|chr25 (40863832-40864674)
               

               
               1-848, gnl|Hg17|chr5 (32263710-32262865)
               

               
               1-848, gnl|Mm7|chr15 (12331366-12332205)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-848, gnl|bosTau2|chr25 (40863832-40864674)
               

               
               1-848, gnl|Hg17|chr5 (32263710-32262865)
               

               
               1-848, gnl|Mm7|chr15 (12331366-12332205)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               sag (0.548145)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               thg (0.126791)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.548145)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               thg (0.126791)

	377-490, - strand, RNAz p=0.902364
	728-848, - strand, RNAz p=0.993379

	1-848, gnl\|bosTau2\|chr25 (40863832-40864674)
	1-848, gnl\|Hg17\|chr5 (32263710-32262865)
	1-848, gnl\|Mm7\|chr15 (12331366-12332205)

	sag (0.548145)
	liv (0.292569)
	ret (0.257467)
	mga (0.160205)
	fco (0.157208)
	bfe (0.149858)
	ski (0.146735)
	hyp (0.142837)
	lnt (0.142308)
	lyg (0.133103)
	sug (0.127291)
	thg (0.126791)