Non-Coding RNA Search

Ss1.1-rlyg33_g6.5

Sequence:


               
               ACAGTGCATCTCACTACCACCACACGGCTTCTGTATATTGTTAGAACAAGCTTGCAAAAT
CATAACCGAGTCCTCCCGGTATCCTCAGTCCTCACCATGCAGTGTGGCTCTGTCTAGTGC
AGAATGAGGAAATGGGAAGCAACAGCTTACAGTCATTATTATAACAGGCCTTTCTGCTCT
TCCCCCCCCCCCCGCCACCCTGGCCTCTCTTTAAACCCACTTCACATTCAAGTATTTACT
AAGTGCCTCCTGTGACACAGCAGCCGCCCTGCATTGAGCACTAATCTTTCACCAGCTGGG
GACAGACAGCGGTGCATGAAACCTCTCTGTTTTGTTCCGTTGAGCTCAGAACCTTCTGTG
CTTTGCCACTGCTCCACCATTTTATTTCAGGTACTACACCATCTCACCAGGGACTTCAAA
GGACACTAATTTATAGGTGACACTACTTCTCTTCCAGTGCTGGCTCTCAACCCAGGGTTC
CAGGAGATCCCGTAACTCAAAGGATTAAATCTGGCGATTTTCATTAGCATAATAAATATC
TAGCTCTACTAGCTGTAAGTATTACCAAGTAATTAACAAAAATTAAGGCAAAAAAACAAA
GCAAAACCAAACCAAATTGTGTGGAGATGAACCACAGTGGTGTTGATGTCAATCTCGAGG
CCACTGGTTTCTGTACCAGTAAATGGTTGCTTTAGAATGTTGGTTGAATCAAAGTTCGGC
ACATACGCTACAAAAAGTACGGTAGATGCAGGATGAATTTAATTTGTAGAATGTTTGCGG
GTAACACAGCAATGTCAAGATTAGATTTAATGACTTTATAAAACGGGCCCTATCAGAAGG
TAAAATATACCAGCTGAGACCAGCAAAGCAGAAGCAGCGTAAACGCCTGCTGCTGTCGAC
TGCATGCGACCCAGCACTGCCTCTGCTCTTCTAAAGACGAGTCCATCGTCCTCAGGGACT
GAGATCAAAACACTGTTTTAAGTGATTAAAATCAAACCTGTATCAGCAAGTTAAGTTGTC
GCATTTCTGTGATTTTTTTCTATTATTCTTTGAAGTGAGTTGGCAGAAGTTCTTTGTAGA
ATTCTTACAGGTCAGATCTTGTTACAGGAAATTGCAGAAGCTCAGTCAGATCATTTTATC
GTATTAAAGTGTGCTAGGCTGAATTCTGCCAGGATTTGGGAATATTTTCCTAAGTTTTGG
GCTAGGTTTATTTGTATCCCCATATTGCAAAAAATATTGTTACCAATCTTACTTTTAAAC
AGTACTCAGTGTAGAAAACAATTCTTTTCATGTTAATTTATTATGCTGAGTCTTGCCAAA
CTAAAAAAACAAAAAACAAAACAAAACTCAAACCACCATCCCCATTGGTAGAGGAGGGGA
TGTTGGGAGGGTTGTAAAAGGCAAGAAGGGTCTAGAATTCCCCACGGTTATTTTTCATCT
TCAGAGAAGATCATCAGAGGGCCCAGCAGACTGTGGAAACTGTAGACCATCTTAGGAAAA
AACAAAAGCCCCACTTACCTTGTTTCCTCTGAGTCTTAAACATAATTTCATTTTCATTTT
ACATGGATGATACTAAGAAGTCAGACCAATTTTTTGATAGGATAAATACAAAATCTTTTA
AGATTATTTTTGAAAAGAAGTTATTTGCATTTTATTAGTGAATCCTATTGAGACATTACT
CAGAAATACGCATTCCTAACAAGCTCTGTCTCCAAACTGCTCATCAAGCTTTTGCTTCTC
TGTCACAATTCTGCTTTAAACTTCTACATTAAATAAGATCAAGGGCTTTCAAATTGGGCA
CCTCTGGGACAGTCCTTAAAATGCCTCAAATTTTAAAATAAAATGCCTTAAACAAATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGTGCATCTCACTACCACCACACGGCTTCTGTATATTGTTAGAACAAGCTTGCAAAAT
CATAACCGAGTCCTCCCGGTATCCTCAGTCCTCACCATGCAGTGTGGCTCTGTCTAGTGC
AGAATGAGGAAATGGGAAGCAACAGCTTACAGTCATTATTATAACAGGCCTTTCTGCTCT
TCCCCCCCCCCCCGCCACCCTGGCCTCTCTTTAAACCCACTTCACATTCAAGTATTTACT
AAGTGCCTCCTGTGACACAGCAGCCGCCCTGCATTGAGCACTAATCTTTCACCAGCTGGG
GACAGACAGCGGTGCATGAAACCTCTCTGTTTTGTTCCGTTGAGCTCAGAACCTTCTGTG
CTTTGCCACTGCTCCACCATTTTATTTCAGGTACTACACCATCTCACCAGGGACTTCAAA
GGACACTAATTTATAGGTGACACTACTTCTCTTCCAGTGCTGGCTCTCAACCCAGGGTTC
CAGGAGATCCCGTAACTCAAAGGATTAAATCTGGCGATTTTCATTAGCATAATAAATATC
TAGCTCTACTAGCTGTAAGTATTACCAAGTAATTAACAAAAATTAAGGCAAAAAAACAAA
GCAAAACCAAACCAAATTGTGTGGAGATGAACCACAGTGGTGTTGATGTCAATCTCGAGG
CCACTGGTTTCTGTACCAGTAAATGGTTGCTTTAGAATGTTGGTTGAATCAAAGTTCGGC
ACATACGCTACAAAAAGTACGGTAGATGCAGGATGAATTTAATTTGTAGAATGTTTGCGG
GTAACACAGCAATGTCAAGATTAGATTTAATGACTTTATAAAACGGGCCCTATCAGAAGG
TAAAATATACCAGCTGAGACCAGCAAAGCAGAAGCAGCGTAAACGCCTGCTGCTGTCGAC
TGCATGCGACCCAGCACTGCCTCTGCTCTTCTAAAGACGAGTCCATCGTCCTCAGGGACT
GAGATCAAAACACTGTTTTAAGTGATTAAAATCAAACCTGTATCAGCAAGTTAAGTTGTC
GCATTTCTGTGATTTTTTTCTATTATTCTTTGAAGTGAGTTGGCAGAAGTTCTTTGTAGA
ATTCTTACAGGTCAGATCTTGTTACAGGAAATTGCAGAAGCTCAGTCAGATCATTTTATC
GTATTAAAGTGTGCTAGGCTGAATTCTGCCAGGATTTGGGAATATTTTCCTAAGTTTTGG
GCTAGGTTTATTTGTATCCCCATATTGCAAAAAATATTGTTACCAATCTTACTTTTAAAC
AGTACTCAGTGTAGAAAACAATTCTTTTCATGTTAATTTATTATGCTGAGTCTTGCCAAA
CTAAAAAAACAAAAAACAAAACAAAACTCAAACCACCATCCCCATTGGTAGAGGAGGGGA
TGTTGGGAGGGTTGTAAAAGGCAAGAAGGGTCTAGAATTCCCCACGGTTATTTTTCATCT
TCAGAGAAGATCATCAGAGGGCCCAGCAGACTGTGGAAACTGTAGACCATCTTAGGAAAA
AACAAAAGCCCCACTTACCTTGTTTCCTCTGAGTCTTAAACATAATTTCATTTTCATTTT
ACATGGATGATACTAAGAAGTCAGACCAATTTTTTGATAGGATAAATACAAAATCTTTTA
AGATTATTTTTGAAAAGAAGTTATTTGCATTTTATTAGTGAATCCTATTGAGACATTACT
CAGAAATACGCATTCCTAACAAGCTCTGTCTCCAAACTGCTCATCAAGCTTTTGCTTCTC
TGTCACAATTCTGCTTTAAACTTCTACATTAAATAAGATCAAGGGCTTTCAAATTGGGCA
CCTCTGGGACAGTCCTTAAAATGCCTCAAATTTTAAAATAAAATGCCTTAAACAAATAAA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               576-1120, gnl|bosTau2|chr11 (62906544-62907091)
               

               
               576-1120, gnl|Hg17|chr1 (233038193-233038714)
               


               
               1122-1860, gnl|bosTau2|chr11 (62907121-62907846)
               

               
               1122-1860, gnl|Hg17|chr1 (233038744-233039376)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               576-1120, gnl|bosTau2|chr11 (62906544-62907091)
               

               
               576-1120, gnl|Hg17|chr1 (233038193-233038714)
               


               
               1122-1860, gnl|bosTau2|chr11 (62907121-62907846)
               

               
               1122-1860, gnl|Hg17|chr1 (233038744-233039376)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

Help | Less info


               
               cbl (0.45919)
               

               
               tra (0.369276)
               

               
               mgm (0.360685)
               

               
               gul (0.355177)
               

               
               sme (0.305437)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               pty (0.285429)
               

               
               spc (0.226732)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.45919)
               

               
               tra (0.369276)
               

               
               mgm (0.360685)
               

               
               gul (0.355177)
               

               
               sme (0.305437)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               pty (0.285429)
               

               
               spc (0.226732)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	576-1120, gnl\|bosTau2\|chr11 (62906544-62907091)
	576-1120, gnl\|Hg17\|chr1 (233038193-233038714)

	1122-1860, gnl\|bosTau2\|chr11 (62907121-62907846)
	1122-1860, gnl\|Hg17\|chr1 (233038744-233039376)

	cbl (0.45919)
	tra (0.369276)
	mgm (0.360685)
	gul (0.355177)
	sme (0.305437)
	lin (0.291206)
	spl (0.286369)
	pty (0.285429)
	spc (0.226732)
	nlu (0.191681)
	cmu (0.186393)
	sag (0.182715)
	rec (0.17307)
	fhi (0.169578)
	nje (0.16592)
	tbr (0.154178)
	lun (0.150489)
	isp (0.150376)
	fat (0.147427)
	lnt (0.142308)
	lyg (0.133103)
	ova (0.129132)
	ret (0.128733)
	med (0.116252)
	eje (0.0988338)