Ss1.1-rlyg33_k16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGATTCAAAAAACTAAAACTTTTTGTTTGTAATATAAAATATGGAATTGATCTTTCCAGG GTCAGAGATGATTAATGTTTTTGCTATATACTTTTATACATTATTTTCTTATCAAACTAG TTAACAAGTATTTTTATATGTTTGTAAGCAAATATGCTTTCACAGCATACCTTGTGTATA TGTAAAGATAAGTATTTAATTCTCACTGTTCACTTTTAACTGACAAAGAAAAGAACGTGA AAACTACAGAAACTGTGGTAGAACCTTACTTGCTGTTCCGGTCCTGGTTGTACCCACCTT TGGCCAGTCACATAGCTACTCAAGAGACCTTCCCAATAGAGTACAACAGGATGAGAAGCT GAAATCACTTCCGATAGCCCCTGCTAGATACTGACTGTTATGTCAAGTAGTAAGTGGTAA ACCTTTTAATGACAATTAGTATAACTGTGGATGGCTTATGATTTTGTTTTTACTTCTGTG GATTGTGTTTAAACAATTCAAAGTTATGTTCTTGATTTTGAGATACTAAGTGGTATTGCA CAGTTGTCACTTTATTGAATGTGTACAACAGTCCCATGGAGTTTATAAAGCGTACCCTTG TATAGCTTCAGGTGCTAGAATTAAAATTGATCTGTTACCACAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGATTCAAAAAACTAAAACTTTTTGTTTGTAATATAAAATATGGAATTGATCTTTCCAGG GTCAGAGATGATTAATGTTTTTGCTATATACTTTTATACATTATTTTCTTATCAAACTAG TTAACAAGTATTTTTATATGTTTGTAAGCAAATATGCTTTCACAGCATACCTTGTGTATA TGTAAAGATAAGTATTTAATTCTCACTGTTCACTTTTAACTGACAAAGAAAAGAACGTGA AAACTACAGAAACTGTGGTAGAACCTTACTTGCTGTTCCGGTCCTGGTTGTACCCACCTT TGGCCAGTCACATAGCTACTCAAGAGACCTTCCCAATAGAGTACAACAGGATGAGAAGCT GAAATCACTTCCGATAGCCCCTGCTAGATACTGACTGTTATGTCAAGTAGTAAGTGGTAA ACCTTTTAATGACAATTAGTATAACTGTGGATGGCTTATGATTTTGTTTTTACTTCTGTG GATTGTGTTTAAACAATTCAAAGTTATGTTCTTGATTTTGAGATACTAAGTGGTATTGCA CAGTTGTCACTTTATTGAATGTGTACAACAGTCCCATGGAGTTTATAAAGCGTACCCTTG TATAGCTTCAGGTGCTAGAATTAAAATTGATCTGTTACCACAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 526-643, - strand, RNAz p=0.925251 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 526-643, - strand, RNAz p=0.925251 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 1-643, gnl|bosTau2|chr15 (24801407-24800757) | |
| 1-643, gnl|canFam2|chr21 (40228352-40228779) | |
| 1-643, gnl|canFam2|chr21 (40228352-40228779) | |
| 1-643, gnl|danRer3|chr7 (20004652-20004287) | |
| 1-643, gnl|danRer3|chr8 (31891407-31891726) | |
| 1-643, gnl|dasNov1|scaffold_14634 (3911-3495) | |
| 1-643, gnl|dasNov1|scaffold_14634 (3916-3495) | |
| 1-643, gnl|echTel1|scaffold_320412 (22279-21856) | |
| 1-643, gnl|echTel1|scaffold_320412 (22284-21856) | |
| 1-643, gnl|galGal2|chr5 (7846788-7847186) | |
| 1-643, gnl|galGal2|chr5 (7846780-7847186) | |
| 1-643, gnl|hg17|chr1 (53169457-53169889) | |
| 1-643, gnl|hg17|chr11 (14256040-14256458) | |
| 1-643, gnl|Hg17|chr11 (14256688-14256044) | |
| 1-643, gnl|loxAfr1|scaffold_216 (137828-137407) | |
| 1-643, gnl|loxAfr1|scaffold_216 (137831-137407) | |
| 1-643, gnl|mm7|chr7 (109962877-109963254) | |
| 1-643, gnl|mm7|chr7 (109962874-109963254) | |
| 1-643, gnl|Mm7|chr7 (109963494-109962878) | |
| 1-643, gnl|monDom2|scaffold_10 (57682796-57682345) | |
| 1-643, gnl|monDom2|scaffold_24 (43100778-43100321) | |
| 1-643, gnl|oryCun1|scaffold_213735 (246827-247245) | |
| 1-643, gnl|oryCun1|scaffold_213735 (246834-247250) | |
| 1-643, gnl|panTro1|chr9 (14463571-14463984) | |
| 1-643, gnl|panTro1|chr9 (14463566-14463984) | |
| 1-643, gnl|rheMac2|chr14 (57647347-57646931) | |
| 1-643, gnl|rheMac2|chr14 (57647350-57646931) | |
| 1-643, gnl|rn3|chr1 (172162367-172162767) | |
| 1-643, gnl|rn3|chr10 (47401752-47402118) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-643, gnl|bosTau2|chr15 (24801407-24800757) | |
| 1-643, gnl|canFam2|chr21 (40228352-40228779) | |
| 1-643, gnl|canFam2|chr21 (40228352-40228779) | |
| 1-643, gnl|danRer3|chr7 (20004652-20004287) | |
| 1-643, gnl|danRer3|chr8 (31891407-31891726) | |
| 1-643, gnl|dasNov1|scaffold_14634 (3911-3495) | |
| 1-643, gnl|dasNov1|scaffold_14634 (3916-3495) | |
| 1-643, gnl|echTel1|scaffold_320412 (22279-21856) | |
| 1-643, gnl|echTel1|scaffold_320412 (22284-21856) | |
| 1-643, gnl|galGal2|chr5 (7846788-7847186) | |
| 1-643, gnl|galGal2|chr5 (7846780-7847186) | |
| 1-643, gnl|hg17|chr1 (53169457-53169889) | |
| 1-643, gnl|hg17|chr11 (14256040-14256458) | |
| 1-643, gnl|Hg17|chr11 (14256688-14256044) | |
| 1-643, gnl|loxAfr1|scaffold_216 (137828-137407) | |
| 1-643, gnl|loxAfr1|scaffold_216 (137831-137407) | |
| 1-643, gnl|mm7|chr7 (109962877-109963254) | |
| 1-643, gnl|mm7|chr7 (109962874-109963254) | |
| 1-643, gnl|Mm7|chr7 (109963494-109962878) | |
| 1-643, gnl|monDom2|scaffold_10 (57682796-57682345) | |
| 1-643, gnl|monDom2|scaffold_24 (43100778-43100321) | |
| 1-643, gnl|oryCun1|scaffold_213735 (246827-247245) | |
| 1-643, gnl|oryCun1|scaffold_213735 (246834-247250) | |
| 1-643, gnl|panTro1|chr9 (14463571-14463984) | |
| 1-643, gnl|panTro1|chr9 (14463566-14463984) | |
| 1-643, gnl|rheMac2|chr14 (57647347-57646931) | |
| 1-643, gnl|rheMac2|chr14 (57647350-57646931) | |
| 1-643, gnl|rn3|chr1 (172162367-172162767) | |
| 1-643, gnl|rn3|chr10 (47401752-47402118) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| lyg (0.399308) | |
| vin (0.332557) | |
| cte (0.29274) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| fco (0.157208) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| csk (0.140746) | |
| ste (0.135208) | |
| thg (0.126791) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lyg (0.399308) | |
| vin (0.332557) | |
| cte (0.29274) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| fco (0.157208) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| csk (0.140746) | |
| ste (0.135208) | |
| thg (0.126791) |