Ss1.1-rlyg34_i8.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
TCCGCTTCCGACGCGCTGTCTGTCGAGCCGGTGTATGTGCGGCAATAACATGTCGGCGCC TCTGCCCGCCGTCGTGCCCGCCGCCCGGAAGGCCACCGCCGCGGTCATTTTCCTTCATGG ATTGGGAGATACAGGGCACGGATGGGCAGAAGCCTTTGCAGGTATCAGAAGTGCTCATAT CAAATATATCTGCCCTCATGCACCAGTTATGCCTGTAACATTAAATATGAACATGGCCAT GCCTTCTTGGTTTAACATTATTGGGCTTTCGCCAGATTCACTGGAAGATGAAACTGGAAT CAAACAGGCAGCAGAAAATGTAAAATCTTTGATAGAGCAGGAGGTGAAGAATGGCATTCC ATCTAACAGAATTATTTTGGGAGGATTTTCTCAGGGAGGAGCCCTGTCCTTGTACACAGC GCTCACCACCCATCAGAAGCTGGCCGGCGTCACCGCTCTCAGCTGCTGGCTCCCACTGCG ATCTTCGTTTCCAGAGTGTCCTATCAGTGGTGTGAATAGAGACATCCCCATCCTTCAGTG CCACGGAGTGCTGGATCCTTTAGTTCCCCTAATGTTTGGCTCTCTAACTGTTGAAAGGCT AAAAACGCTGGTAAATCCAGCCAATGTGACTTTCAAAACCTACGAAGGCATGATGCACAG TTCCTGCCAACAGGAGATGCTGGATGTCAAGCAGTTCATTGAAAAACTGCTGCCTCCCAT TGATTGACGTCACCGAGGCCTGCGTGGATGTCACACCAGCACCTTCGTAGTAGAATATCA ACCTTTTCCTGCGCCCCATCTTGAAACCTCTAATGTTTGCAGTGTTAAAATATTTTGCAA AGACACACCAATGACACAGACTAAATAAATCTCCTTGTGGGACATTTAGGATCTCTTAAG TTTCACTATATGTGTTTGTATAAAATGATCCGGAATATACTAGTATTAAATAGGTGAAGC AGCTAGCTTCTTTTTCCCAAATGTAATTCAGCAAAATAATAAAATACTGCAACCAGATTT TTTTTATTATATCATTTGAAAACCATTAGTATGCTTAATGAAAACTTGTTCAGGTGTAAA TGAGCAGTCGGGTCATCAACAGTTTATGCGTGCTGTGACTTCGACTATGGACTTTTCCAC CGTTCCCTAGTCACCATGCAGGATCTGTATTTTTAGATATGTGTTCATATACACTTAATG GTTATAAATCATAGTAGGAATGAAGTGTTATTAAATTATTCCTAATGATAGGGATAATAC CTCTAAGTGTCAATAAAGAGTGATAGTTCTCTCTTCAATTAATGGCCCTTTTATTTTGGG GACCAGGTTTTTCTTTCCTGAACGTAATTTCTATTTAATATTGTTTTTTTCTTCTCTAGA AAAAAGATACGTTCTTTCTTCTTTTGTATCCTTCATAACAGACCAAATATGTCTCCTTGC CCTAGACATCTGCTGGCAGTTTGTGCTGTAATTTGACGTTCTGAATCACAGACATGATGG TGTTTAAAATGTACTTACAGAAAGGAATCACAGACATCCCTTCAAATTTTCTACACTACT TCTTAAACTGGACCTTAGTCCACAGTTTAGACCTACAGAATCATCAGAATCTTTAGTCCA GATAACGAGAATAATTCTGTGGTTGGATTATTCTGTTATTAACTGAAAGAATAATTAGGT CATATTCTAGTATGTTCTGGAATATTTAAGGCTGATCTTAAAAACTGTTAATTTCTAGGA TGATTTGCTCTAAGTAGATTCTCCTCATAGCATAGAGTTTTAGTTTATTTATTTTGCACG TATGTTTGAAACCAACTGCTGTAGGAAATGAACAATCCACTTGAAAACTATGCTTTACTT TTATCTGCCAGCAGACATTTTGGAAATGTTCACTTTAATCAGATGATCTTTTTAGGTTAG TTTTTGTGCAAACATTAAAGTAGCAATTACTTGATTTTAAATAGTCAAAATTTTCAGATT ATTGGTTAAAATTATTTGAAAACAAATTTTGGGTAATAAAAGTCAGAACTCAGTACATAT AATCTAGTTACCACACAGTTTCATACATAGCAGAAACATACACCTGATATTTCCAAACTC TTATTAGTCTTTCTGCTGTACTCCAGCTGACCAGAACAGCTCCAGGAATGGGTGCTACTC AATAATAGCGATAACTTGGCGTGGACTATTTAGGGTGTTAATAATGAAGCCATATGTTTA TGTCTGGATTTACAATTTTTAAACAATCACTTACTATGTCATTTCGCTTTACCTTGGAGA ACAAAAATGGTTGTTTCACTTCACAAATCAGCAAGATCTAATTTATGGCAAGAACTATTC TGTTGAAATGTGCTGTAATGTGGGAAAATGTAAATCTTTTTCACGGTTTCTATCAATGTG AAATAAAATTTAATTCTGACTTTTAAAAAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
TCCGCTTCCGACGCGCTGTCTGTCGAGCCGGTGTATGTGCGGCAATAACATGTCGGCGCC TCTGCCCGCCGTCGTGCCCGCCGCCCGGAAGGCCACCGCCGCGGTCATTTTCCTTCATGG ATTGGGAGATACAGGGCACGGATGGGCAGAAGCCTTTGCAGGTATCAGAAGTGCTCATAT CAAATATATCTGCCCTCATGCACCAGTTATGCCTGTAACATTAAATATGAACATGGCCAT GCCTTCTTGGTTTAACATTATTGGGCTTTCGCCAGATTCACTGGAAGATGAAACTGGAAT CAAACAGGCAGCAGAAAATGTAAAATCTTTGATAGAGCAGGAGGTGAAGAATGGCATTCC ATCTAACAGAATTATTTTGGGAGGATTTTCTCAGGGAGGAGCCCTGTCCTTGTACACAGC GCTCACCACCCATCAGAAGCTGGCCGGCGTCACCGCTCTCAGCTGCTGGCTCCCACTGCG ATCTTCGTTTCCAGAGTGTCCTATCAGTGGTGTGAATAGAGACATCCCCATCCTTCAGTG CCACGGAGTGCTGGATCCTTTAGTTCCCCTAATGTTTGGCTCTCTAACTGTTGAAAGGCT AAAAACGCTGGTAAATCCAGCCAATGTGACTTTCAAAACCTACGAAGGCATGATGCACAG TTCCTGCCAACAGGAGATGCTGGATGTCAAGCAGTTCATTGAAAAACTGCTGCCTCCCAT TGATTGACGTCACCGAGGCCTGCGTGGATGTCACACCAGCACCTTCGTAGTAGAATATCA ACCTTTTCCTGCGCCCCATCTTGAAACCTCTAATGTTTGCAGTGTTAAAATATTTTGCAA AGACACACCAATGACACAGACTAAATAAATCTCCTTGTGGGACATTTAGGATCTCTTAAG TTTCACTATATGTGTTTGTATAAAATGATCCGGAATATACTAGTATTAAATAGGTGAAGC AGCTAGCTTCTTTTTCCCAAATGTAATTCAGCAAAATAATAAAATACTGCAACCAGATTT TTTTTATTATATCATTTGAAAACCATTAGTATGCTTAATGAAAACTTGTTCAGGTGTAAA TGAGCAGTCGGGTCATCAACAGTTTATGCGTGCTGTGACTTCGACTATGGACTTTTCCAC CGTTCCCTAGTCACCATGCAGGATCTGTATTTTTAGATATGTGTTCATATACACTTAATG GTTATAAATCATAGTAGGAATGAAGTGTTATTAAATTATTCCTAATGATAGGGATAATAC CTCTAAGTGTCAATAAAGAGTGATAGTTCTCTCTTCAATTAATGGCCCTTTTATTTTGGG GACCAGGTTTTTCTTTCCTGAACGTAATTTCTATTTAATATTGTTTTTTTCTTCTCTAGA AAAAAGATACGTTCTTTCTTCTTTTGTATCCTTCATAACAGACCAAATATGTCTCCTTGC CCTAGACATCTGCTGGCAGTTTGTGCTGTAATTTGACGTTCTGAATCACAGACATGATGG TGTTTAAAATGTACTTACAGAAAGGAATCACAGACATCCCTTCAAATTTTCTACACTACT TCTTAAACTGGACCTTAGTCCACAGTTTAGACCTACAGAATCATCAGAATCTTTAGTCCA GATAACGAGAATAATTCTGTGGTTGGATTATTCTGTTATTAACTGAAAGAATAATTAGGT CATATTCTAGTATGTTCTGGAATATTTAAGGCTGATCTTAAAAACTGTTAATTTCTAGGA TGATTTGCTCTAAGTAGATTCTCCTCATAGCATAGAGTTTTAGTTTATTTATTTTGCACG TATGTTTGAAACCAACTGCTGTAGGAAATGAACAATCCACTTGAAAACTATGCTTTACTT TTATCTGCCAGCAGACATTTTGGAAATGTTCACTTTAATCAGATGATCTTTTTAGGTTAG TTTTTGTGCAAACATTAAAGTAGCAATTACTTGATTTTAAATAGTCAAAATTTTCAGATT ATTGGTTAAAATTATTTGAAAACAAATTTTGGGTAATAAAAGTCAGAACTCAGTACATAT AATCTAGTTACCACACAGTTTCATACATAGCAGAAACATACACCTGATATTTCCAAACTC TTATTAGTCTTTCTGCTGTACTCCAGCTGACCAGAACAGCTCCAGGAATGGGTGCTACTC AATAATAGCGATAACTTGGCGTGGACTATTTAGGGTGTTAATAATGAAGCCATATGTTTA TGTCTGGATTTACAATTTTTAAACAATCACTTACTATGTCATTTCGCTTTACCTTGGAGA ACAAAAATGGTTGTTTCACTTCACAAATCAGCAAGATCTAATTTATGGCAAGAACTATTC TGTTGAAATGTGCTGTAATGTGGGAAAATGTAAATCTTTTTCACGGTTTCTATCAATGTG AAATAAAATTTAATTCTGACTTTTAAAAAAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
1169-1328, + strand, RNAz p=0.996449 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
1169-1328, + strand, RNAz p=0.996449 |
Aligned organism(s): 39 entry(ies) | More info |
Aligned organism(s): 39 entry(ies) | Help | Less info |
1-105, gnl|bosTau2|chr14 (12375167-12375271) | |
1-105, gnl|danRer3|chr15 (30121431-30121353) | |
1-105, gnl|dasNov1|scaffold_19088 (47367-47270) | |
1-105, gnl|echTel1|scaffold_164646 (1354-1279) | |
1-105, gnl|fr1|chrUn (3130552-3130633) | |
1-105, gnl|galGal2|chr2 (109475114-109475212) | |
1-105, gnl|hg17|chr8 (55176846-55176944) | |
1-105, gnl|Hg17|chr8 (55176965-55176866) | |
1-105, gnl|loxAfr1|scaffold_122257 (3605-3535) | |
1-105, gnl|mm7|chr1 (4803604-4803500) | |
1-105, gnl|Mm7|chr1 (4803473-4803576) | |
1-105, gnl|monDom2|scaffold_4 (110501110-110501015) | |
1-105, gnl|oryCun1|scaffold_133850 (8934-8854) | |
1-105, gnl|panTro1|chr7 (56861032-56861130) | |
1-105, gnl|rheMac2|chr8 (56692496-56692594) | |
1-105, gnl|rn3|chr5 (14911117-14911221) | |
1-105, gnl|tetNig1|chr6 (4582211-4582289) | |
392-496, gnl|bosTau2|chr14 (12387615-12387719) | |
392-496, gnl|canFam2|chr29 (8673594-8673723) | |
392-496, gnl|danRer3|chr19 (70449540-70449669) | |
392-496, gnl|dasNov1|scaffold_6004 (41100-40990) | |
392-496, gnl|echTel1|scaffold_297555 (40603-40474) | |
392-496, gnl|fr1|chrUn (3129073-3129185) | |
392-496, gnl|galGal2|chr2 (109469654-109469761) | |
392-496, gnl|hg17|chr8 (55127750-55127879) | |
392-496, gnl|Hg17|chr8 (55127872-55127768) | |
392-496, gnl|loxAfr1|scaffold_110173 (8724-8834) | |
392-496, gnl|mm7|chr1 (4835100-4834971) | |
392-496, gnl|Mm7|chr1 (4834976-4835080) | |
392-496, gnl|monDom2|scaffold_4 (110543768-110543648) | |
392-496, gnl|oryCun1|scaffold_113609 (13854-13770) | |
392-496, gnl|panTro1|chr7 (56811677-56811806) | |
392-496, gnl|rheMac2|chr8 (56647052-56647181) | |
392-496, gnl|rn3|chr5 (14888529-14888658) | |
392-496, gnl|tetNig1|chr6 (4580807-4580917) | |
392-496, gnl|xenTro1|scaffold_8 (1978264-1978375) | |
669-2423, gnl|bosTau2|chr14 (12390868-12392636) | |
669-2423, gnl|Hg17|chr8 (55123236-55121487) | |
669-2423, gnl|Mm7|chr1 (4840550-4842326) |
Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
1-105, gnl|bosTau2|chr14 (12375167-12375271) | |
1-105, gnl|danRer3|chr15 (30121431-30121353) | |
1-105, gnl|dasNov1|scaffold_19088 (47367-47270) | |
1-105, gnl|echTel1|scaffold_164646 (1354-1279) | |
1-105, gnl|fr1|chrUn (3130552-3130633) | |
1-105, gnl|galGal2|chr2 (109475114-109475212) | |
1-105, gnl|hg17|chr8 (55176846-55176944) | |
1-105, gnl|Hg17|chr8 (55176965-55176866) | |
1-105, gnl|loxAfr1|scaffold_122257 (3605-3535) | |
1-105, gnl|mm7|chr1 (4803604-4803500) | |
1-105, gnl|Mm7|chr1 (4803473-4803576) | |
1-105, gnl|monDom2|scaffold_4 (110501110-110501015) | |
1-105, gnl|oryCun1|scaffold_133850 (8934-8854) | |
1-105, gnl|panTro1|chr7 (56861032-56861130) | |
1-105, gnl|rheMac2|chr8 (56692496-56692594) | |
1-105, gnl|rn3|chr5 (14911117-14911221) | |
1-105, gnl|tetNig1|chr6 (4582211-4582289) | |
392-496, gnl|bosTau2|chr14 (12387615-12387719) | |
392-496, gnl|canFam2|chr29 (8673594-8673723) | |
392-496, gnl|danRer3|chr19 (70449540-70449669) | |
392-496, gnl|dasNov1|scaffold_6004 (41100-40990) | |
392-496, gnl|echTel1|scaffold_297555 (40603-40474) | |
392-496, gnl|fr1|chrUn (3129073-3129185) | |
392-496, gnl|galGal2|chr2 (109469654-109469761) | |
392-496, gnl|hg17|chr8 (55127750-55127879) | |
392-496, gnl|Hg17|chr8 (55127872-55127768) | |
392-496, gnl|loxAfr1|scaffold_110173 (8724-8834) | |
392-496, gnl|mm7|chr1 (4835100-4834971) | |
392-496, gnl|Mm7|chr1 (4834976-4835080) | |
392-496, gnl|monDom2|scaffold_4 (110543768-110543648) | |
392-496, gnl|oryCun1|scaffold_113609 (13854-13770) | |
392-496, gnl|panTro1|chr7 (56811677-56811806) | |
392-496, gnl|rheMac2|chr8 (56647052-56647181) | |
392-496, gnl|rn3|chr5 (14888529-14888658) | |
392-496, gnl|tetNig1|chr6 (4580807-4580917) | |
392-496, gnl|xenTro1|scaffold_8 (1978264-1978375) | |
669-2423, gnl|bosTau2|chr14 (12390868-12392636) | |
669-2423, gnl|Hg17|chr8 (55123236-55121487) | |
669-2423, gnl|Mm7|chr1 (4840550-4842326) |
Expressed library(ies): 40 entry(ies) | More info |
Expressed library(ies): 40 entry(ies) | Help | Less info |
kid (2.46497) | |
tes (1.66251) | |
lyg (1.59723) | |
ret (0.7724) | |
sag (0.730861) | |
bfe (0.599431) | |
mgm (0.541028) | |
sin (0.524843) | |
tbr (0.462535) | |
mgp (0.461361) | |
fat (0.442282) | |
lin (0.436808) | |
aor (0.390549) | |
col (0.390016) | |
gul (0.355177) | |
fty (0.351679) | |
vin (0.332557) | |
cli (0.305623) | |
isp (0.300752) | |
ski (0.29347) | |
liv (0.292569) | |
thg (0.253582) | |
cbe (0.239234) | |
mas (0.210305) | |
hea (0.204499) | |
jej (0.197844) | |
nep (0.183925) | |
eye (0.170503) | |
nco (0.161734) | |
lun (0.150489) | |
ssp (0.13552) | |
ste (0.135208) | |
nmm (0.132802) | |
ova (0.129132) | |
sug (0.127291) | |
cly (0.120642) | |
eru (0.120048) | |
cbl (0.114797) | |
spc (0.113366) | |
ldo (0.0970026) |
Expressed library(ies): 40 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
kid (2.46497) | |
tes (1.66251) | |
lyg (1.59723) | |
ret (0.7724) | |
sag (0.730861) | |
bfe (0.599431) | |
mgm (0.541028) | |
sin (0.524843) | |
tbr (0.462535) | |
mgp (0.461361) | |
fat (0.442282) | |
lin (0.436808) | |
aor (0.390549) | |
col (0.390016) | |
gul (0.355177) | |
fty (0.351679) | |
vin (0.332557) | |
cli (0.305623) | |
isp (0.300752) | |
ski (0.29347) | |
liv (0.292569) | |
thg (0.253582) | |
cbe (0.239234) | |
mas (0.210305) | |
hea (0.204499) | |
jej (0.197844) | |
nep (0.183925) | |
eye (0.170503) | |
nco (0.161734) | |
lun (0.150489) | |
ssp (0.13552) | |
ste (0.135208) | |
nmm (0.132802) | |
ova (0.129132) | |
sug (0.127291) | |
cly (0.120642) | |
eru (0.120048) | |
cbl (0.114797) | |
spc (0.113366) | |
ldo (0.0970026) |