Ss1.1-rmas904b_l1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCTCTACATCACGGAGCAGCCCGAGGATGATGACGTGAAGGGGCAGTGGGACCGGCTGG TGCTCAACACACCGTCTTTCCCCAGCAACTACTGGGACAAGTTTGTCAAGCGGAAGGTCC TGGACAAGCACGGGGACATCTACGGGCGGGAGCGGATCGCCGAGCTGCTGGGTATGGATC TGGCCACGCTGGAGATCACAGCCCACAACGAGCGCAAGCCTGAACCACCGCCAGGGCTGC TCACCTGGCTCATGTCCATCGATGTCAAGTACCAGATCTGGAAGTTTGGGGTCATCTTCA CAGACAACTCGTTCCTGTACCTGGGCTGGTACATGGTGATGTCCCTCCTGGGTCACTACA ACAACTTCTTCTTCGCTGCCCACCTCCTGGACATTGCCATGGGGGTCAAGACGCTGCGTA CCATCCTCTCGTCCGTCACCCACAATGGCAAACAGCTGGTGATGACCGTGGGCCTCCTGG CGGTTGTGGTCTACCTGTACACCGTGGTGGCCTTCAACTTCTTCCGCAAGTTCTACAACA AGAGCGAGGACGAGGACGAGCCTGACATGAAGTGTGATGACATGATGACGTGTTACCTGT TTCACATGTATGTGGGTGTCCGCGCTGGTGGGGGCATTGGGGACGAGATCGAGGACCCAG CAGGAGATGAATATGAGCTCTACCGGGTGGTCTTTGACATCACCTTCTTCTTCTTCGTCA TCGTCATCCTGTTGGCCATCATCCAGGGTCTGATCATTGATGCTTTTGGCGAGCTCCGAG ACCAACAAGAGCAAGTGAGAGAAGATATGGAGACCAAGTGCTTCATCTGTGGCATCGGCA GCGATTACTTTGATACGACACCACACGGGTTCGAGACCCACACGCTAGAGGAGCACAACC TGGCCAATTACATGTTTTTCCTGATGTATCTGATAAACAAGGACGAGACAGAACACACGG GTCAGGAGTCTTATGTCTGGAAGATGTACCAAGAGAGATGCTGGGATTTCTTCCCGGCTG GCGATTGTTTCCGCAAGCAGTATGAGGACCAGCTTAGCTGAGACACCCCCAGCTGGCCCC GCACCCCCACCTCAAGTGCCTTGTTTTCACAGCAAGCCCCTTAGCCCCCCAAACCCTCCC CCCAAGGCAGCTAGGGGAGAGGTGACCATGCAGTGGAGAAATAAAGTCTGTGCTACACCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCTCTACATCACGGAGCAGCCCGAGGATGATGACGTGAAGGGGCAGTGGGACCGGCTGG TGCTCAACACACCGTCTTTCCCCAGCAACTACTGGGACAAGTTTGTCAAGCGGAAGGTCC TGGACAAGCACGGGGACATCTACGGGCGGGAGCGGATCGCCGAGCTGCTGGGTATGGATC TGGCCACGCTGGAGATCACAGCCCACAACGAGCGCAAGCCTGAACCACCGCCAGGGCTGC TCACCTGGCTCATGTCCATCGATGTCAAGTACCAGATCTGGAAGTTTGGGGTCATCTTCA CAGACAACTCGTTCCTGTACCTGGGCTGGTACATGGTGATGTCCCTCCTGGGTCACTACA ACAACTTCTTCTTCGCTGCCCACCTCCTGGACATTGCCATGGGGGTCAAGACGCTGCGTA CCATCCTCTCGTCCGTCACCCACAATGGCAAACAGCTGGTGATGACCGTGGGCCTCCTGG CGGTTGTGGTCTACCTGTACACCGTGGTGGCCTTCAACTTCTTCCGCAAGTTCTACAACA AGAGCGAGGACGAGGACGAGCCTGACATGAAGTGTGATGACATGATGACGTGTTACCTGT TTCACATGTATGTGGGTGTCCGCGCTGGTGGGGGCATTGGGGACGAGATCGAGGACCCAG CAGGAGATGAATATGAGCTCTACCGGGTGGTCTTTGACATCACCTTCTTCTTCTTCGTCA TCGTCATCCTGTTGGCCATCATCCAGGGTCTGATCATTGATGCTTTTGGCGAGCTCCGAG ACCAACAAGAGCAAGTGAGAGAAGATATGGAGACCAAGTGCTTCATCTGTGGCATCGGCA GCGATTACTTTGATACGACACCACACGGGTTCGAGACCCACACGCTAGAGGAGCACAACC TGGCCAATTACATGTTTTTCCTGATGTATCTGATAAACAAGGACGAGACAGAACACACGG GTCAGGAGTCTTATGTCTGGAAGATGTACCAAGAGAGATGCTGGGATTTCTTCCCGGCTG GCGATTGTTTCCGCAAGCAGTATGAGGACCAGCTTAGCTGAGACACCCCCAGCTGGCCCC GCACCCCCACCTCAAGTGCCTTGTTTTCACAGCAAGCCCCTTAGCCCCCCAAACCCTCCC CCCAAGGCAGCTAGGGGAGAGGTGACCATGCAGTGGAGAAATAAAGTCTGTGCTACACCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 956-1114, - strand, RNAz p=0.931605 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 956-1114, - strand, RNAz p=0.931605 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 115-248, gnl|bosTau2|chr18 (40916888-40916755) | |
| 115-248, gnl|Hg17|chr19 (43760396-43760529) | |
| 115-248, gnl|Mm7|chr7 (25944238-25944105) | |
| 453-590, gnl|bosTau2|chr10 (17690097-17689960) | |
| 453-590, gnl|canFam2|chr30 (4176072-4175905) | |
| 453-590, gnl|danRer3|chr20 (37105998-37106148) | |
| 453-590, gnl|dasNov1|scaffold_12199 (21770-21600) | |
| 453-590, gnl|echTel1|scaffold_320511 (87489-87668) | |
| 453-590, gnl|fr1|chrUn (81750041-81750207) | |
| 453-590, gnl|galGal2|chr5 (27059138-27058979) | |
| 453-590, gnl|hg17|chr15 (31937246-31937428) | |
| 453-590, gnl|Hg17|chr15 (31937270-31937407) | |
| 453-590, gnl|loxAfr1|scaffold_12675 (26017-25850) | |
| 453-590, gnl|mm7|chr2 (112488487-112488317) | |
| 453-590, gnl|Mm7|chr2 (112488461-112488324) | |
| 453-590, gnl|monDom2|scaffold_12 (11673237-11673401) | |
| 453-590, gnl|oryCun1|scaffold_110477 (12402-12237) | |
| 453-590, gnl|panTro1|chr16 (31573847-31574017) | |
| 453-590, gnl|rheMac2|chr7 (12089494-12089664) | |
| 453-590, gnl|rn3|chr3 (98378745-98378579) | |
| 453-590, gnl|tetNig1|chr10 (4173100-4173257) | |
| 453-590, gnl|xenTro1|scaffold_572 (667847-668015) | |
| 811-915, gnl|bosTau2|chr18 (40913289-40913185) | |
| 811-915, gnl|canFam2|chr1 (117372192-117372084) | |
| 811-915, gnl|danRer3|chr10 (28912844-28912736) | |
| 811-915, gnl|dasNov1|scaffold_62333 (911-803) | |
| 811-915, gnl|echTel1|scaffold_320511 (89758-89866) | |
| 811-915, gnl|fr1|chrUn (97573766-97573870) | |
| 811-915, gnl|galGal2|chr5 (27055838-27055730) | |
| 811-915, gnl|hg17|chr19 (43768571-43768679) | |
| 811-915, gnl|Hg17|chr19 (43768569-43768673) | |
| 811-915, gnl|loxAfr1|scaffold_12675 (21547-21439) | |
| 811-915, gnl|mm7|chr7 (25938972-25938864) | |
| 811-915, gnl|Mm7|chr7 (25938972-25938868) | |
| 811-915, gnl|monDom2|scaffold_139 (616141-616249) | |
| 811-915, gnl|oryCun1|scaffold_82253 (2556-2664) | |
| 811-915, gnl|panTro1|chr20 (40681540-40681650) | |
| 811-915, gnl|rheMac2|chr7 (12092616-12092724) | |
| 811-915, gnl|rn3|chr1 (84195381-84195273) | |
| 811-915, gnl|tetNig1|chr16 (6215762-6215869) | |
| 811-915, gnl|xenTro1|scaffold_572 (670867-670974) | |
| 956-1200, gnl|bosTau2|chr18 (40912811-40912568) | |
| 956-1200, gnl|Hg17|chr19 (43769797-43770037) | |
| 956-1200, gnl|Mm7|chr7 (25938003-25937791) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 115-248, gnl|bosTau2|chr18 (40916888-40916755) | |
| 115-248, gnl|Hg17|chr19 (43760396-43760529) | |
| 115-248, gnl|Mm7|chr7 (25944238-25944105) | |
| 453-590, gnl|bosTau2|chr10 (17690097-17689960) | |
| 453-590, gnl|canFam2|chr30 (4176072-4175905) | |
| 453-590, gnl|danRer3|chr20 (37105998-37106148) | |
| 453-590, gnl|dasNov1|scaffold_12199 (21770-21600) | |
| 453-590, gnl|echTel1|scaffold_320511 (87489-87668) | |
| 453-590, gnl|fr1|chrUn (81750041-81750207) | |
| 453-590, gnl|galGal2|chr5 (27059138-27058979) | |
| 453-590, gnl|hg17|chr15 (31937246-31937428) | |
| 453-590, gnl|Hg17|chr15 (31937270-31937407) | |
| 453-590, gnl|loxAfr1|scaffold_12675 (26017-25850) | |
| 453-590, gnl|mm7|chr2 (112488487-112488317) | |
| 453-590, gnl|Mm7|chr2 (112488461-112488324) | |
| 453-590, gnl|monDom2|scaffold_12 (11673237-11673401) | |
| 453-590, gnl|oryCun1|scaffold_110477 (12402-12237) | |
| 453-590, gnl|panTro1|chr16 (31573847-31574017) | |
| 453-590, gnl|rheMac2|chr7 (12089494-12089664) | |
| 453-590, gnl|rn3|chr3 (98378745-98378579) | |
| 453-590, gnl|tetNig1|chr10 (4173100-4173257) | |
| 453-590, gnl|xenTro1|scaffold_572 (667847-668015) | |
| 811-915, gnl|bosTau2|chr18 (40913289-40913185) | |
| 811-915, gnl|canFam2|chr1 (117372192-117372084) | |
| 811-915, gnl|danRer3|chr10 (28912844-28912736) | |
| 811-915, gnl|dasNov1|scaffold_62333 (911-803) | |
| 811-915, gnl|echTel1|scaffold_320511 (89758-89866) | |
| 811-915, gnl|fr1|chrUn (97573766-97573870) | |
| 811-915, gnl|galGal2|chr5 (27055838-27055730) | |
| 811-915, gnl|hg17|chr19 (43768571-43768679) | |
| 811-915, gnl|Hg17|chr19 (43768569-43768673) | |
| 811-915, gnl|loxAfr1|scaffold_12675 (21547-21439) | |
| 811-915, gnl|mm7|chr7 (25938972-25938864) | |
| 811-915, gnl|Mm7|chr7 (25938972-25938868) | |
| 811-915, gnl|monDom2|scaffold_139 (616141-616249) | |
| 811-915, gnl|oryCun1|scaffold_82253 (2556-2664) | |
| 811-915, gnl|panTro1|chr20 (40681540-40681650) | |
| 811-915, gnl|rheMac2|chr7 (12092616-12092724) | |
| 811-915, gnl|rn3|chr1 (84195381-84195273) | |
| 811-915, gnl|tetNig1|chr16 (6215762-6215869) | |
| 811-915, gnl|xenTro1|scaffold_572 (670867-670974) | |
| 956-1200, gnl|bosTau2|chr18 (40912811-40912568) | |
| 956-1200, gnl|Hg17|chr19 (43769797-43770037) | |
| 956-1200, gnl|Mm7|chr7 (25938003-25937791) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| mas (1.26183) | |
| ssp (0.677599) | |
| ste (0.540833) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| ese (0.253004) | |
| nms (0.213858) | |
| pty (0.142714) | |
| eru (0.120048) | |
| ldo (0.0970026) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (1.26183) | |
| ssp (0.677599) | |
| ste (0.540833) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| ese (0.253004) | |
| nms (0.213858) | |
| pty (0.142714) | |
| eru (0.120048) | |
| ldo (0.0970026) |