Non-Coding RNA Search

Ss1.1-rmas906b_a7.5

Sequence:


               
               CCCCACGGAGGAGGGCGGCGGCCCCAGCCCAGATGGGCTGAGTCCAATTGCCGAAGCTTC
CTGGAGAGACCAGTCCTTCAGCCAGTGAATCCTCGCCCAGCGATGTACCCCAGAGCCCCA
CAGAGCCCCCGCCCTCACAGGAGAAGAAGAAGGAAAGGGCACCAGAGCGGAGGGTGTCAG
CCCCTGTCCGGCCCCGGGGGCCCCGGGCCCAGAACCGCAAGGCCATCGTGGACAAGTTTG
GCGGGGCAGCCTCGGGCCCCACCGCCCTGTTCCGGAACACCAAGGCCGCAGGGGCTGCCA
TCGGCGGTGTTAAGAACATGCTCTTGGAGTGGTGCCGGGCCATGACTAGGAACTACGAGC
ACGTGGACATCCAGAACTTCTCCTCCAGCTGGAGCAGCGGCATGGCCTTCTGCGCCCTCA
TCCACAAGTTCTTCCCCGATGCCTTTGACTATGCTGAGCTGGACCCCACAAAGCGCAGGC
ACAACTTCACCTTGGCCTTCTCCACGGCAGAGAAGCTGGCTGACTGCGCCCAGCTGCTGG
AGGTGGATGACATGGTGCGGCTGGCAGTGCCTGACTCCAAGTGCGTCTACACCTACATCC
AGGAGCTATACCGCAGCCTCGTGCAAAAGGGGCTGGTGAAGACCAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCACGGAGGAGGGCGGCGGCCCCAGCCCAGATGGGCTGAGTCCAATTGCCGAAGCTTC
CTGGAGAGACCAGTCCTTCAGCCAGTGAATCCTCGCCCAGCGATGTACCCCAGAGCCCCA
CAGAGCCCCCGCCCTCACAGGAGAAGAAGAAGGAAAGGGCACCAGAGCGGAGGGTGTCAG
CCCCTGTCCGGCCCCGGGGGCCCCGGGCCCAGAACCGCAAGGCCATCGTGGACAAGTTTG
GCGGGGCAGCCTCGGGCCCCACCGCCCTGTTCCGGAACACCAAGGCCGCAGGGGCTGCCA
TCGGCGGTGTTAAGAACATGCTCTTGGAGTGGTGCCGGGCCATGACTAGGAACTACGAGC
ACGTGGACATCCAGAACTTCTCCTCCAGCTGGAGCAGCGGCATGGCCTTCTGCGCCCTCA
TCCACAAGTTCTTCCCCGATGCCTTTGACTATGCTGAGCTGGACCCCACAAAGCGCAGGC
ACAACTTCACCTTGGCCTTCTCCACGGCAGAGAAGCTGGCTGACTGCGCCCAGCTGCTGG
AGGTGGATGACATGGTGCGGCTGGCAGTGCCTGACTCCAAGTGCGTCTACACCTACATCC
AGGAGCTATACCGCAGCCTCGTGCAAAAGGGGCTGGTGAAGACCAAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12834980|dbj|BAB23109.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12834980|dbj|BAB23109.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               83-257, gnl|bosTau2|chr15 (50577976-50577802)
               

               
               83-257, gnl|Hg17|chr11 (57069927-57070098)
               

               
               83-257, gnl|Mm7|chr2 (84659758-84659587)
               


               
               496-648, gnl|bosTau2|chr15 (50573180-50573029)
               

               
               496-648, gnl|Hg17|chr11 (57074006-57074153)
               

               
               496-648, gnl|Mm7|chr2 (84655265-84655119)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-257, gnl|bosTau2|chr15 (50577976-50577802)
               

               
               83-257, gnl|Hg17|chr11 (57069927-57070098)
               

               
               83-257, gnl|Mm7|chr2 (84659758-84659587)
               


               
               496-648, gnl|bosTau2|chr15 (50573180-50573029)
               

               
               496-648, gnl|Hg17|chr11 (57074006-57074153)
               

               
               496-648, gnl|Mm7|chr2 (84655265-84655119)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ton (0.351)
               

               
               mas (0.210305)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.351)
               

               
               mas (0.210305)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               ldo (0.0970026)

	83-257, gnl\|bosTau2\|chr15 (50577976-50577802)
	83-257, gnl\|Hg17\|chr11 (57069927-57070098)
	83-257, gnl\|Mm7\|chr2 (84659758-84659587)

	496-648, gnl\|bosTau2\|chr15 (50573180-50573029)
	496-648, gnl\|Hg17\|chr11 (57074006-57074153)
	496-648, gnl\|Mm7\|chr2 (84655265-84655119)

	ton (0.351)
	mas (0.210305)
	pty (0.142714)
	ssp (0.13552)
	ldo (0.0970026)