Ss1.1-rmas907b_d23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGACAAGAGGACCATCCAGTTTGTAGACTGGTGTCCCACAGGCTTCAAGGTGGGCATCA ACTACCAGCCCCCGACGGTGGTGCCAGGGGGAGACCTGGCCAAGGTGCAGCGGGCCGTGT GCATGCTGAGCAACACCACGGCCATCGCGGAGGCCTGGGCCCGCCTGGACCACAAGTTCG ACCTGATGTACGCCAAGCGTGCCTTCGTGCACTGGTATGTCGGCGAGGGGATGGAAGAAG GAGAATTTTCTGAGGCCCGGGAGGACCTGGCTGCCCTGGAGAAGGATTATGAGGAAGTGG GGACTGATTCATTTGAGGAAGAAAACGAAGGGGAGGAATTTTAAATACAGATGTTCCTCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGACAAGAGGACCATCCAGTTTGTAGACTGGTGTCCCACAGGCTTCAAGGTGGGCATCA ACTACCAGCCCCCGACGGTGGTGCCAGGGGGAGACCTGGCCAAGGTGCAGCGGGCCGTGT GCATGCTGAGCAACACCACGGCCATCGCGGAGGCCTGGGCCCGCCTGGACCACAAGTTCG ACCTGATGTACGCCAAGCGTGCCTTCGTGCACTGGTATGTCGGCGAGGGGATGGAAGAAG GAGAATTTTCTGAGGCCCGGGAGGACCTGGCTGCCCTGGAGAAGGATTATGAGGAAGTGG GGACTGATTCATTTGAGGAAGAAAACGAAGGGGAGGAATTTTAAATACAGATGTTCCTCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 40-159, + strand, RNAz p=0.94627 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-159, + strand, RNAz p=0.94627 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-339, gnl|bosTau2|chr2 (65191958-65191619) | |
| 1-339, gnl|canFam2|chr37 (28798655-28798895) | |
| 1-339, gnl|danRer3|chr23 (48663582-48663816) | |
| 1-339, gnl|dasNov1|scaffold_7517 (55236-55476) | |
| 1-339, gnl|echTel1|scaffold_308242 (131830-132070) | |
| 1-339, gnl|fr1|chrUn (159869302-159869542) | |
| 1-339, gnl|galGal2|chr7 (22996151-22995911) | |
| 1-339, gnl|hg17|chr2 (219940581-219940821) | |
| 1-339, gnl|Hg17|chr2 (219940920-219940581) | |
| 1-339, gnl|loxAfr1|scaffold_44791 (27672-27912) | |
| 1-339, gnl|mm7|chr1 (75438460-75438700) | |
| 1-339, gnl|Mm7|chr1 (75438799-75438460) | |
| 1-339, gnl|monDom2|scaffold_39 (1309473-1309233) | |
| 1-339, gnl|oryCun1|scaffold_163484 (10842-10603) | |
| 1-339, gnl|panTro1|chr13 (110103514-110103754) | |
| 1-339, gnl|rheMac2|chr12 (83105575-83105815) | |
| 1-339, gnl|rn3|chr9 (74643560-74643800) | |
| 1-339, gnl|tetNig1|chr2 (13034469-13034229) | |
| 1-339, gnl|xenTro1|scaffold_31 (2714269-2714509) | |
| 5-338, gnl|bosTau2|chr10 (46592779-46592455) | |
| 5-338, gnl|Hg17|chr12 (47865405-47865075) | |
| 5-338, gnl|Mm7|chr15 (98935639-98935308) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-339, gnl|bosTau2|chr2 (65191958-65191619) | |
| 1-339, gnl|canFam2|chr37 (28798655-28798895) | |
| 1-339, gnl|danRer3|chr23 (48663582-48663816) | |
| 1-339, gnl|dasNov1|scaffold_7517 (55236-55476) | |
| 1-339, gnl|echTel1|scaffold_308242 (131830-132070) | |
| 1-339, gnl|fr1|chrUn (159869302-159869542) | |
| 1-339, gnl|galGal2|chr7 (22996151-22995911) | |
| 1-339, gnl|hg17|chr2 (219940581-219940821) | |
| 1-339, gnl|Hg17|chr2 (219940920-219940581) | |
| 1-339, gnl|loxAfr1|scaffold_44791 (27672-27912) | |
| 1-339, gnl|mm7|chr1 (75438460-75438700) | |
| 1-339, gnl|Mm7|chr1 (75438799-75438460) | |
| 1-339, gnl|monDom2|scaffold_39 (1309473-1309233) | |
| 1-339, gnl|oryCun1|scaffold_163484 (10842-10603) | |
| 1-339, gnl|panTro1|chr13 (110103514-110103754) | |
| 1-339, gnl|rheMac2|chr12 (83105575-83105815) | |
| 1-339, gnl|rn3|chr9 (74643560-74643800) | |
| 1-339, gnl|tetNig1|chr2 (13034469-13034229) | |
| 1-339, gnl|xenTro1|scaffold_31 (2714269-2714509) | |
| 5-338, gnl|bosTau2|chr10 (46592779-46592455) | |
| 5-338, gnl|Hg17|chr12 (47865405-47865075) | |
| 5-338, gnl|Mm7|chr15 (98935639-98935308) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| cli (0.152812) | |
| che (0.136314) |