Non-Coding RNA Search

Ss1.1-rmas908b_a1.5

Sequence:


               
               CAGCTGCTGCTCACTGCGCCGCTCCAGTACCAGTCAGGACTCACCCGCAGGGTCCATGCT
TGTGCCCGGCTCGACTCGTCCATCCTCGGAGAAGAGCCCATGAGGCTCCCAGTCCCCAGT
GAGTGCCGCCCTGAAGGATGTCCCAGCTCTCCTCCACCTTGAAGCGCTACACAGAATCAG
CCCGCTACACAGATGCCCCTTACGCCAAATCAGGCTATGGCACCTACACTCCCTCTTCCT
ACGGGGCCAACCTGGCCGCCTCCTTCCTGGAGAAGGAGAAGCTCGGTTTCAAGCCGGGCC
CCTCAACCAGCTTCCTCACCCGTCCCCGTACCTACGGCCCCCCATCCATCCTGGACTATG
ACCGAGGCCGCCCCTTGCTGAGACCCGACATCATCGGAGGTGGTAAGCGGGCGGAGAGCC
AGACTCGGGGCACTGAGCGGCCTTCAGGGAGTGGACTCAGCGGGGGCAGTGGATTCCCTT
ACGGAGTGACCACCAGCTCCCTCAGCTACCTGCCCGTGAATGCCCGCGACCAGGGGGTAA
CCCTGACCCAGAAGAAGTCGAATAGTCAATCGGACCTGGCCCGGGATTTCTCCAGCCTCC
GGACCTCAGATAGCTACCGGCTAGACCCAGGGAACTTGGGCCGCAGCCCCATGCTGGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCTGCTGCTCACTGCGCCGCTCCAGTACCAGTCAGGACTCACCCGCAGGGTCCATGCT
TGTGCCCGGCTCGACTCGTCCATCCTCGGAGAAGAGCCCATGAGGCTCCCAGTCCCCAGT
GAGTGCCGCCCTGAAGGATGTCCCAGCTCTCCTCCACCTTGAAGCGCTACACAGAATCAG
CCCGCTACACAGATGCCCCTTACGCCAAATCAGGCTATGGCACCTACACTCCCTCTTCCT
ACGGGGCCAACCTGGCCGCCTCCTTCCTGGAGAAGGAGAAGCTCGGTTTCAAGCCGGGCC
CCTCAACCAGCTTCCTCACCCGTCCCCGTACCTACGGCCCCCCATCCATCCTGGACTATG
ACCGAGGCCGCCCCTTGCTGAGACCCGACATCATCGGAGGTGGTAAGCGGGCGGAGAGCC
AGACTCGGGGCACTGAGCGGCCTTCAGGGAGTGGACTCAGCGGGGGCAGTGGATTCCCTT
ACGGAGTGACCACCAGCTCCCTCAGCTACCTGCCCGTGAATGCCCGCGACCAGGGGGTAA
CCCTGACCCAGAAGAAGTCGAATAGTCAATCGGACCTGGCCCGGGATTTCTCCAGCCTCC
GGACCTCAGATAGCTACCGGCTAGACCCAGGGAACTTGGGCCGCAGCCCCATGCTGGCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61879307|ref|XP_618041.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61879307|ref|XP_618041.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               214-373, - strand, RNAz p=0.611187

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               214-373, - strand, RNAz p=0.611187

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               95-660, gnl|bosTau2|chr15 (14457059-14456494)
               

               
               95-660, gnl|Hg17|chr11 (118749443-118748881)
               

               
               95-660, gnl|Mm7|chr9 (44009709-44010310)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-660, gnl|bosTau2|chr15 (14457059-14456494)
               

               
               95-660, gnl|Hg17|chr11 (118749443-118748881)
               

               
               95-660, gnl|Mm7|chr9 (44009709-44010310)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mas (0.42061)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.42061)
               

               
               eru (0.120048)

	95-660, gnl\|bosTau2\|chr15 (14457059-14456494)
	95-660, gnl\|Hg17\|chr11 (118749443-118748881)
	95-660, gnl\|Mm7\|chr9 (44009709-44010310)