Non-Coding RNA Search

Ss1.1-rmas908b_m13.5

Sequence:


               
               CTTCTCCTACCCCCTCACTGCCCTCTTCCTGGAAGTATTCACCCAATATCCGTGCCCCAC
CTCCTATTGCTTACAACCCACTGCTCTCACCCTTTTTCCCCCAAGCTGCCCGAACTCTCC
CTAAGGCCCAAAGCCAAGGGCCTCGGGCAGCCCCCAAGCAAGGCATCAAGGCACTGGATT
TCATGCGGCACCAGCCCTACCAACTTAAAACTGCCATGTTCTGTTTTGATGAGGTTCCTC
CCACTCCTGGACCCACCGCCTTAGGGCCTCCCAAAACTGCCCGAGTCCAGGAGATCCGCC
GATTTTCCACTCCAGCGCCCCAGCCCACTGCAGAGCCACTGGCCCCCACTGTGCTTGCCC
CCCGAGCAGCCACTACATTGGATGAGCCCATTTGGAGGGCAGAGCTGGCCTCAGCCCCTG
TCCTGAGCCCAGCCCCTCCTCCAGAGTCTCCCAGGGGTCTTGGGACTTCCCCCAGCTCCT
GTGGCTTTCAGGTAGCCAGGCCCCGGTTCTCAGCTACCAGAACGGGATTGCAGGCTCATG
TGTGGAGGCCTGGGGCAGGCCACCACTGAACAGGGCACAGCTCCCAGGACCAAGGGGAGG
CAGAACATCCAGTTCCTAAAGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTCCTACCCCCTCACTGCCCTCTTCCTGGAAGTATTCACCCAATATCCGTGCCCCAC
CTCCTATTGCTTACAACCCACTGCTCTCACCCTTTTTCCCCCAAGCTGCCCGAACTCTCC
CTAAGGCCCAAAGCCAAGGGCCTCGGGCAGCCCCCAAGCAAGGCATCAAGGCACTGGATT
TCATGCGGCACCAGCCCTACCAACTTAAAACTGCCATGTTCTGTTTTGATGAGGTTCCTC
CCACTCCTGGACCCACCGCCTTAGGGCCTCCCAAAACTGCCCGAGTCCAGGAGATCCGCC
GATTTTCCACTCCAGCGCCCCAGCCCACTGCAGAGCCACTGGCCCCCACTGTGCTTGCCC
CCCGAGCAGCCACTACATTGGATGAGCCCATTTGGAGGGCAGAGCTGGCCTCAGCCCCTG
TCCTGAGCCCAGCCCCTCCTCCAGAGTCTCCCAGGGGTCTTGGGACTTCCCCCAGCTCCT
GTGGCTTTCAGGTAGCCAGGCCCCGGTTCTCAGCTACCAGAACGGGATTGCAGGCTCATG
TGTGGAGGCCTGGGGCAGGCCACCACTGAACAGGGCACAGCTCCCAGGACCAAGGGGAGG
CAGAACATCCAGTTCCTAAAGTTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               198-317, - strand, RNAz p=0.536926
               

               
               358-581, - strand, RNAz p=0.961751

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               198-317, - strand, RNAz p=0.536926
               

               
               358-581, - strand, RNAz p=0.961751

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               71-212, - strand, RNAmicro p=0.999478
               

               
               388-496, - strand, RNAmicro p=0.993577

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               71-212, - strand, RNAmicro p=0.999478
               

               
               388-496, - strand, RNAmicro p=0.993577

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-624, gnl|bosTau2|chr20 (3761706-3761065)
               

               
               1-624, gnl|Hg17|chr10 (75077050-75076428)
               

               
               1-624, gnl|Mm7|chr14 (18317423-18316806)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-624, gnl|bosTau2|chr20 (3761706-3761065)
               

               
               1-624, gnl|Hg17|chr10 (75077050-75076428)
               

               
               1-624, gnl|Mm7|chr14 (18317423-18316806)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mas (0.42061)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.42061)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)

	198-317, - strand, RNAz p=0.536926
	358-581, - strand, RNAz p=0.961751

	71-212, - strand, RNAmicro p=0.999478
	388-496, - strand, RNAmicro p=0.993577

	1-624, gnl\|bosTau2\|chr20 (3761706-3761065)
	1-624, gnl\|Hg17\|chr10 (75077050-75076428)
	1-624, gnl\|Mm7\|chr14 (18317423-18316806)