Non-Coding RNA Search

Ss1.1-rmas910b_h5.5

Sequence:


               
               ACATGGAGGATGATTTCATGTGCGATGATGAGGAGGACTACGACTTGGAATACTCTGAAG
ATAGTAACTCTGAGCCAAATGTGGATTTGGAAAATCAGTACTATAATTCCAAAGCATTAA
AAGAAGATGACCCAAAAGCAGCATTAAGCAGTTTTCAAAAGGTTTTGGAACTTGAAGGTG
AAAAAGGAGAGTGGGGATTCAAAGCACTGAAACAAATGATTAAGATTAACTTCAAGTTGA
CAAACTTTCCAGAAATGATGAACAGATATAAGCAACTATTGACCTATATTCGGAGTGCAG
TCACAAGAAATTATTCTGAAAAATCCATAAATTCTATTCTTGATTATATCTCCACTTCTA
AACAGATGGATTTACTGCAGGAATTCTATGAAACAACACTGGAAGCTTTGAAAGATGCTA
AGAATGACAGACTGTGGTTTAAGACAAATACAAAGCTGGGGAAGTTATATTTAGAACGAG
AGGAATATGGAAAACTTCAAAAAATTTTACGCCAGTTACATCAGTCCTGCCAGACTGATG
ATGGTGAAGATGACCTGAAAAAAGGCACACAGTTATTAGAAATATATGCTTTGGAAATTC
AAATGTACACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATGGAGGATGATTTCATGTGCGATGATGAGGAGGACTACGACTTGGAATACTCTGAAG
ATAGTAACTCTGAGCCAAATGTGGATTTGGAAAATCAGTACTATAATTCCAAAGCATTAA
AAGAAGATGACCCAAAAGCAGCATTAAGCAGTTTTCAAAAGGTTTTGGAACTTGAAGGTG
AAAAAGGAGAGTGGGGATTCAAAGCACTGAAACAAATGATTAAGATTAACTTCAAGTTGA
CAAACTTTCCAGAAATGATGAACAGATATAAGCAACTATTGACCTATATTCGGAGTGCAG
TCACAAGAAATTATTCTGAAAAATCCATAAATTCTATTCTTGATTATATCTCCACTTCTA
AACAGATGGATTTACTGCAGGAATTCTATGAAACAACACTGGAAGCTTTGAAAGATGCTA
AGAATGACAGACTGTGGTTTAAGACAAATACAAAGCTGGGGAAGTTATATTTAGAACGAG
AGGAATATGGAAAACTTCAAAAAATTTTACGCCAGTTACATCAGTCCTGCCAGACTGATG
ATGGTGAAGATGACCTGAAAAAAGGCACACAGTTATTAGAAATATATGCTTTGGAAATTC
AAATGTACACAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61858280|ref|XP_585989.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61858280|ref|XP_585989.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-366, gnl|bosTau2|chr11 (64390915-64390550)
               

               
               1-366, gnl|Hg17|chr15 (47224568-47216947)
               

               
               1-366, gnl|Mm7|chr2 (125590717-125583585)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-366, gnl|bosTau2|chr11 (64390915-64390550)
               

               
               1-366, gnl|Hg17|chr15 (47224568-47216947)
               

               
               1-366, gnl|Mm7|chr2 (125590717-125583585)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ste (0.270416)
               

               
               cbl (0.229595)
               

               
               mas (0.210305)
               

               
               cst (0.140036)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.270416)
               

               
               cbl (0.229595)
               

               
               mas (0.210305)
               

               
               cst (0.140036)
               

               
               ebs (0.118301)

	1-366, gnl\|bosTau2\|chr11 (64390915-64390550)
	1-366, gnl\|Hg17\|chr15 (47224568-47216947)
	1-366, gnl\|Mm7\|chr2 (125590717-125583585)

	ste (0.270416)
	cbl (0.229595)
	mas (0.210305)
	cst (0.140036)
	ebs (0.118301)